RNA id: AMCG00005750


Basic Information

Item Value
RNA id AMCG00005750
length 5134
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00005750
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9165033 ~ 9180805 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGAGTAACAGGgaggcAGGTGTTACAGGTGCACCGCTCACCAGGGCTGCATGATCTGGGTCCAGTGAGCTGGCAGTTGGCGCTCTGTCTGCTCCTCATCTTTACCGTCGTCTACTTCAGCATCTGGAAAGGGCTGGAGGGGGTGATCACTGCAGTGCTGGATGAGTTTCCCCAGGTCTTGGCCAAGCGCAGGGAGTGGTTTGTCCTGGGCCTGGTCTGCGTCTGCTACCTAGGCGCGCTCTCCACTCTGACCTGTGGTGGGGCCTTCGTGGTGAAGCTGTTTGAGGAGTACGCCACCGGGCCCGCCGTCATCACCGTGGTCTTCCTGGAGGTCATCGCAGTCTCCTGGTTCTATGgtATGTCCCGGTTCTGCAGCAACGTGGAGATGATGCTGGGCTTCAAGCCGGGCTGGTATTGGCGGATCTGCTGGTTCATCATTTGCAGCTTCTTGTTCTTCCCCCCGGAGCTGAAGATGTTTGACTATGCCTACCCCCCCTGGACCACAGCCCTGGGCTACTGCATCGGGGTCTCCTCCTTCATCTGTGTGCCTGCCTACATGGTGTACCACCTAATCACCATTCCCGGCACCTTCAAGCAGAGGCTTCTAAAGAGCATCACCCCCGAGCCCAGTAGCGGCGGGGGACACAGTGAGATCATCACCAATGCCGTGTGAGGacgtgggggcgggggggtggtggAGAGCCGCCAACCCCCATGGCAGAACTGTCACCGCCCACTCCCTCCCCCACACCGCCCTCCCTGTTCAACAGAGCAGCGGGGGGCGAAGGGGTGGTGATGGGAGACTCCCTTGCAATGTGCAAACCCACAGACCTGtcccagcagagagagagagtctgattttaatatgtaactattatattcttattattattattcttattttctctcACGTTGCTGGCCTGACGGGGCTGTTGGAAGCTCTCGCAGCGAACAACACTGTTTAGCTCCTCTCTCGATGTCTCTGCACTCTCATTCCTCCTGGAATAGACACACATTCCTGCAGCACAACCTCAATATAGAGATCTATAGACTTCCAAAGACAgggtgagagagaaggagaaatgCTGTAATGAGACTGAagtgttgggggagggggagcttatatacgtgtgtgtctgtctgactgtatatttgtaggtgtgtgtgtatacatgcatacaggtgtgtgtgtgtgtgtacagtgtaagTCTATACAGTGATAGTTGTTGGGGACTCTGTGCatggtgtcagtgtgtcaggtgTCACATGGGGCTCGGCGGACTGTTCCGTTGGAGGGTACACAAGTGAGACAAGTTCATCTATTGGcctattattacttgatttctcagcagacacccttatccaggttgacttacaattgttacaatatatcacattattttttacatttacccatttatacagctgggcatttactggagcaatctaggtaaagtactttgctcaagggtacaatagcAGTGTCCCAACCTGGGATCGAACCCACAcccctgtgctccagagtccagagagCCTATATCTTAATTATTTGATATAGTGACCTGGTAGACTAAAACCCGTTCTCCGTTCTGAGGCGACCcagtcaattaattaatactgtCAAACGAATACAATATTGACGCACAAGCGGTGTCACTCTGTGTACTGTGTTGTGAAGTGTTGTGTTTCTCTTCTGGCAGGAACACCGATTAACGTAGGTTGTGACGTTTCTACGCATGTTTTTGATCTACAAAATTCCAATAAGAATCCGTTTTGGCCTTACGATAAATATACTCAGTATTGAAACGTTGAAGTTGTCGAGGCATTGCAAGTCCGTGTTGATTAACTGTATAATAGGACTGAAACGAGAAACGACACGAGTCTCAGTGATGTAGTGAACTGTATACTTTAAAggtattgtgtgtattttttacgCGTTCTTTAATACGTATGGAGTGTTTTTCGTAGTACAACGTTACAAATTTGCTATTTTTGGACTGTAGATCCACTGAAATGGGACCAGAccgattttattttaattttcagaacCATTACCTTGGGAAGTTactgtcttgtttttctctgttgtaATTGAAGTCCTGTAAATATCTGAAGCAGGTTTTATGATATACAGTAGGAAGAAGTTCGGTTTGATATCTTATGAATATCTTTGCGGTAACTTAAGTTTTTAATACCCTGGCAGAGACAGACATCTTAATAGGACAGTAGCCTACttgtaatgtaatttcaatgtaagctttgtatttatttttctgtattattattattaccgtatagtaaatattttatatttttatgatctCAGACTTTGTATATCTCAAAATCAATGGAGACCAAGGGCCTTAACGACTGCTTGAAGTGCATTCTTACATTGTTGCAGTTTTTATGACTTTTTTCAAAGTTAATGCTTTTTCAAGTTCCACCtttcaaacattaaattaaaagttaatttcaCAGAATTACTTTGCAAAAGATATCTGGTATGTAATGTGGTGACGTAATGCGGGGTGACGTGTACCATTGGCAATGTCGCAACACAAAATGTTCtaaaaagcagaataaaaaagTACTGCTGTAGTTATGTTTAATTAGGACACCCTTCGCTTGAGGAATCATCAAATCTCACGAGTCACTTATTCTGCTTAGTTTCATATCTTAGTGCCCTTAAACGGTTAAAGTCTGATTTTCACTCCTGGCTCAGGTGGACACAGTTATATGAATATTTTAGACACTCAGCCAAAGACTGGAGGACGCTGGTCATATAGAGTCACGCTATTAGACTCTCCAGGAGCAGGAGTGAAGATGCCAgccctatatatatatgaattgttCTCATAACGTCCTCCTCAATGGCCATTTCAATGCTTTAAGAATATATGTGCATTAATTGCTACCAAAAAACACACCCAGAAAACAGCCCTTTAAATTATGAATGGAAGCCCTGGGTTCTGAGAGCGCTGTGCGGatgtttgtgtgcgtttgtgttttcAGAGATGCAGCGATTAAATTTTAATGCTGATGGCACCACAGCCCTGGGGGGGtgaatagataaatacatggatacataatcaaataaaaacaagacttGCAACAAGTGAAGTAAGTGCTAGTTAATGCGGTGCTTTTGAAATCTGCACCAGGGGGACTTTGCCAGCTTCTCCCTTTCTGAGACCAGAGCCGTCCtggtacaattaaaaaataaagcgaTGCTGCAGAAAAACATAGTTAGTGTCTAAATAATTCAGCCCCAGAGCAAATTCACACGCCACCACACGTCTCTAATTACACACAGGGTGCGTATCAGCCCATTTGGAGATGTGATCatgttaattgttattttatcatCACGCCCCGGTGTGTTTCAGAGTTCTGCACCCAGCACGTTATTGGAGCGTTTCTGTACATAAGGGGCAGGTGTCTTTAACAGGAGCTCGGGTCGAGCTGTTGAAAGGACAGTCAGTTTGCTCTCCGTGCTCCTGTTAACAGCCAGAGAataggagggtgggggggcccTACAGtgattaacatttcatttgctGCCCTTGTTTGTGTAGTGTTTGCTGCGTGGAGGTTGTTCCGGGGTTTTTACACTGTAAGAGCACAGAGCGTGTGTTTGCAGGTGCCATGAATGAGATTCCCATTGTGCAGCAGTTTGAGTCGTGGCAGGTTTTGTTAGCTGTGAGCGTCAGTACAGAGCAGTCCAACTCTGGTCCTGGACAGCTGCCTGTGCTGGTTCCCATTGCCTTCGAGCTTCAATTTCAACTGAACCAGTGGTTGCTTTGGTTTGGTTGAAACTTAACACAGTCTTTTACAAAACAACTTTCAGATTGTGGCTCTTTGCATCCAGAGGCCATTGCTCTAGTCCTGTGTTTCTCAACCCTGGATCTCGACAGACTAGGGGtcacatgtatttgcaaatgctCTTCGAAAACTTTTAAGTCAACCGCAATTGTAGTAGAAGGCAACTAGGGTTTATTTTGGCCCAGACTGGCTTGACTGAGGGAACGAGGACCTGGCCACGAGGATGAGGCCATCAGAACCCCCCACCAGGTGGAACAAGCCaaaggaggaagggagggagggagggaaggagggagggaaagcACTGAATGCTGGGAAAGCATGTTTCTCGCCCGATATTTATGCGGAGTAAGGCGGAAGTCCCAAACCTTGTTGAAAACATTGTGTTCACTTCTATTCATTCAGCCAATCCATCACTCCTCGACCCTCCCCGAGCTGTCGCCTTCAAAGGAGGTGAAGATCAGGAATGGGGGGGAGGTGGGCTGGATTGAATTGATTGGAAGAGCGGAGTGATGAAAGGGGCTCACCTTAATCAATTGGGGGGACATGATCTTAATGTGTTTGAAGGACATCGCATATGCATGTGACCCCCTGCCAGCCCTGATTTCTGTTCCAGCCGTGCTCTAAACTCCTCACCTGACCACCTGACCTCACAATACTGCTTCAACTGGACCCTTTTCATTAACGCCTGCTGCGAAAAAGTTGGAATCGTTCCCTTGACTCTTCTCAGTAGCAGAGACCTCGGCAGCGACAGTAAACAGAAGGCACAGGGCCGCTCCAGGACTGGGCTGAGTGTTGTGTACAGTGGAATAGTTTATGAGGTGCTGGATAATTAACGCTAGCCTCTCTAGATCCACAGAACAGGGGGAGCTGAAGCAATACTTACAAGTGTGATGTGAATGGAGATTTCTCCAGCGTGAAGGGAACAGCCTGCAGCTGTGAAAACTCACATCAGCCGGCTTACTGTGCAGTGGGAGTCGCATTTCTCCCTCCTGGTTTGGTATGTGCAGCTAAAAGAGTAATGTCCCCCCCACAAAAGAAAGAGAGGtgaaatccccccccaccccgtcaattcagtctgtctgtgtgtgaagagCATCCCTGTATATTACATGCTGTACTGTGTGTACTCTGTGCTGCCCCATCAGCGTTGTGTTCTCTGTCGTCTCCACGCTTGAAAACCGACGTGTCCTCGTACGTCTGTCTGTCATTGATGATCTATGGAAATCTCttactgtattgaaaaatatatacgtGTATAAAGAAAGATAATACTGAATAAATAAGGAATCTATGACCAAAAAGaa

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194153 lncRNA upstream 56663 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 56663 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 70363 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 93286 9021950 ~ 9071747 (+) True G154091
TU194041 lncRNA upstream 311180 8853578 ~ 8853853 (+) False AMCG00005787
TU194189 lncRNA downstream 11491 9192296 ~ 9194187 (+) True G154175
TU194291 lncRNA downstream 259688 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 724967 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 897502 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 1086468 10267273 ~ 10356244 (+) True AMCG00005929
AMCG00005753 mRNA upstream 817 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005752 mRNA upstream 25372 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005751 mRNA upstream 36188 9115471 ~ 9128845 (+) True AMCG00005751
AMCG00005749 mRNA upstream 72470 9083152 ~ 9092563 (+) True AMCG00005749
AMCG00005745 mRNA upstream 125971 9035288 ~ 9039062 (+) True AMCG00005745
AMCG00005774 mRNA downstream 59829 9240634 ~ 9251830 (+) True AMCG00005774
AMCG00005775 mRNA downstream 71549 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005784 mRNA downstream 118780 9299585 ~ 9330590 (+) True AMCG00005784
AMCG00005783 mRNA downstream 165638 9346443 ~ 9349421 (+) True AMCG00005783
AMCG00005764 mRNA downstream 216320 9397125 ~ 9406873 (+) True AMCG00005764
TU193852 other upstream 657958 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 934443 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1899062 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2676413 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3943118 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 255095 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 406997 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 700577 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 884355 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 899630 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile