RNA id: AMCG00005752


Basic Information

Item Value
RNA id AMCG00005752
length 228
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00005752
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9131037 ~ 9139661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGAGAGCGCGGAGTGCAAGAGGGGCAGCGACGGATTGGGGGGCGGATTTCTAGGGAGCACAAGAGAAGCCTATGgGTACTTGATCATGACAGATGAGTGGTTCTCCGAATACGTCTACGAGGTAGTCGTGGACAAGAAGTACATCTCCCCCGAGGTGCTGGAAGTGATGAAACAAAAACCTGTGGTGCTTCCTGCTTGGGACCCAATGGGAGCCCTTGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194153 lncRNA upstream 22667 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 22667 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 36367 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 59290 9021950 ~ 9071747 (+) True G154091
TU194041 lncRNA upstream 277184 8853578 ~ 8853853 (+) False AMCG00005787
TU194189 lncRNA downstream 52635 9192296 ~ 9194187 (+) True G154175
TU194291 lncRNA downstream 300832 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 766111 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 938646 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 1127612 10267273 ~ 10356244 (+) True AMCG00005929
AMCG00005751 mRNA upstream 2192 9115471 ~ 9128845 (+) True AMCG00005751
AMCG00005749 mRNA upstream 38474 9083152 ~ 9092563 (+) True AMCG00005749
AMCG00005745 mRNA upstream 91975 9035288 ~ 9039062 (+) True AMCG00005745
AMCG00005746 mRNA upstream 114299 9010184 ~ 9016738 (+) True AMCG00005746
AMCG00005742 mRNA upstream 226953 8897277 ~ 8904084 (+) True AMCG00005742
AMCG00005753 mRNA downstream 19570 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005750 mRNA downstream 25372 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005774 mRNA downstream 100973 9240634 ~ 9251830 (+) True AMCG00005774
AMCG00005775 mRNA downstream 112693 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005784 mRNA downstream 159924 9299585 ~ 9330590 (+) True AMCG00005784
TU193852 other upstream 623962 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 900447 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1865066 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2642417 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3909122 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 296239 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 448141 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 741721 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 925499 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 940774 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile