RNA id: AMCG00005753



Basic Information


Item Value
RNA id AMCG00005753
length 846
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00005753
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9159231 ~ 9164216 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atggcGGTAAGGTTTGTGGAAAAGCAAGTGGGATCTAGAGCAGGGATTGCAGCTTATCAgcctgagagactgagggactgcAGATGGAAGAATGAACCAAGTCAGATTGTGGCCCTAACACGGGTGGAGCCCTTCCAACTGGGAGCATTCAGCCTAGCTTCCCGCACGAAGATTGACGCTGATCTGGGCTTCCTCCAGTCTGACCCCTCTGGCTTATCTTGTTGCTTCTGCTGCGGCAAAGTGCCTCTCTACACTACGCAGTTCGGTGCAGATAACCCCGCCTTCGAGAAGCCTGGATTGGATGAGATAACCCTGAGCCAATTGCACACACACCTGGGCTGGAAAGGGGCGGAGCTTCGCATCCAGCACGGCCAATCCCCACTGGCCCTGCTTCCTGCTGCCCTTCCTCCTTCCTCTACTGCAGCAGATGGGAGCCACAGCACCAGGTACCAGAGTTCCACCGCCACGCCCATAGCCGCCACCACCGCCACAGCCATGGAGATGAAGCAGCCGATGATGATGGAGAACAGCAACCCGAGCTCTGCCCCCGAAAGTGAGGAACTCTGGGAGAACGGGCTGCTGATTGGGGGGGGCAGTGGCGCCCCCCAGGAAGGAGACAAGGGACTGGCGGGGGAGAAGTTTAACTCCGCCATAGGGCAGGTGTCGAACGGATACCCCTCGTCCCCACAGAGTCCCGGGGAGGGGGGCATGGCTTGGCACGGCCAGCTGGCGCACAGGAGTCCCCCATCAAACACACatgtcaaaacacacaaacacattccaGATCAGAACGCAGCCCTGCCGGACCAGGGGAACAGCCCTCACATCAGGcagaaaaaagtataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194153 lncRNA upstream 50861 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 50861 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 64561 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 87484 9021950 ~ 9071747 (+) True G154091
TU194041 lncRNA upstream 305378 8853578 ~ 8853853 (+) False AMCG00005787
TU194189 lncRNA downstream 28080 9192296 ~ 9194187 (+) True G154175
TU194291 lncRNA downstream 276277 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 741556 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 914091 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 1103057 10267273 ~ 10356244 (+) True AMCG00005929
AMCG00005752 mRNA upstream 19570 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005751 mRNA upstream 30386 9115471 ~ 9128845 (+) True AMCG00005751
AMCG00005749 mRNA upstream 66668 9083152 ~ 9092563 (+) True AMCG00005749
AMCG00005745 mRNA upstream 120169 9035288 ~ 9039062 (+) True AMCG00005745
AMCG00005746 mRNA upstream 142493 9010184 ~ 9016738 (+) True AMCG00005746
AMCG00005750 mRNA downstream 817 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005774 mRNA downstream 76418 9240634 ~ 9251830 (+) True AMCG00005774
AMCG00005775 mRNA downstream 88138 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005784 mRNA downstream 135369 9299585 ~ 9330590 (+) True AMCG00005784
AMCG00005783 mRNA downstream 182227 9346443 ~ 9349421 (+) True AMCG00005783
TU193852 other upstream 652156 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 928641 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1893260 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2670611 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3937316 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 271684 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 423586 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 717166 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 900944 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 916219 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile