RNA id: AMCG00005759


Basic Information

Item Value
RNA id AMCG00005759
length 3230
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00005759
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8742312 ~ 8752368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTTTGAGATTAGGATCAGCATGCCTCATTAAGAAACGGGGATCATGGCTACCTGGATCAAATGGCTTTGGGTTCATCGGAATTACCTCATCATCTTCCTCACCCCGCTGATGCTGCTGCCCCTGCCTCTCGTCTTGTCCTCCAAGGAGGCAAGCTGCGGCTTTGTGATCATCCTGATGGCGCTGTACTGGTGCACCGAGGCCCTGCCGCTGGCCGTCACTGCCCTGCTGCCCGTGGTGCTCTTCCCCATGATGGGCATCATGGAATCCGGAGATGTGTGCATCCAGTACCTGAAGGACAGCAACATGCTGTTCATCGGGGGGCTGCTGGTGGCCATCGGTGTGGAGACCTGGGACCTGCACAAGCGTATCGCCCTGCGGGTGCTGCTCATCGTCGGGGTCAAGCCTGCCTTGCTGATGATGGGCTTCATGGGCACCACCGCCTTCCTGTCCATGTGGATCAGCAACACGGCCACCACGGCCATGATGGTGCCCATCGCACAGGCCGTCCTCCAGCAGCTCAGCAACACCGAGGCCGAGAGCGATGAACTGGAGCTGCAGAACGGCCAGGTCAACCAAGGCTTCGATCAGGAGACCAAGGTGGACTCCCCCCCGGAGTACGAGGACGCTGTAAAAGACGCCAGGCAAGGCAACAGGCACATCATGACGATCGAGGATCATGCCAGCGCCGTGGAGGAGGCTGGGAGGCGGCGGGCGGACAAGTACCTGAACCTGTCCAAAGGGAtgagcctgtgtgtgtgctacGCTGCCAGCATCGGGGGCACTGCCACCCTGACGGGCACCACCCCCAACCTCATCCTCAAGGGCCAGATAGACGATATCTATCCAGGGAATGGAGACGTGGTCAACTTTGCCAGCTGGTTTGGCTTTGCTTTCCCCAACATGATCCTCATGCTGGTGCTGTCCTACATCTGGCTACAGTTCATGTACCTGGGCTTCGATATCAAGAAGTCCTTTGGCTGTGGGGACAAAAACACGAACGACCGACGGGCCTATGAGGTGATGAAGGACGAGTACCGCAAGCTGGGGTCAATGAACTTCGCTGAGGTGGCCATCCTTACCCTGTTCATcctgctggtgctgctgtggTTCACCCGGGACCCGGGCTTCATACCGGGCTGGGCCACCGTCCTCttcaacaagaacaacaagcaGTATGTCACTGACGGCACCGTCGCCATATTTATGGCCATTCTGCTGTTCGTCATCCCCTCCAGGCTGCCCAGTTTTTCGTGCTCTGCCCGCGGCGAGGAAGGAGACGGCCCCGCGGTGATCAAGGCCCCCAAGGCGCTTCTGCAGTGGGAGGTGGTTCATCAGAAGATGCCCTGGAACATCGTGCTGCTCCTGGGAGGGGGCTTTGCCTTGGCCAAAGGCAGTGAGGTCTCGGGGCTGTCCGTGTGGCTGGGCGAGAGCTTGGCACCGCTGCAGTCCATTCCCCCGGCTGCCATCTCCATCCTGCTTTGCCTCCTGGTGGGCACCTTCACTGAGTGCTCCAGCAACACGGCCACCACCACGCTATTCCTGCCCATCCTGGCCTCCATGGCTACGACTATCAGACTGCACCCCCTGTACGTGATGCTGCCGTGCACCGTCTCCGCCTCCCTGGCCTTCATGCTGCCGGTCGCCACCCCTCCGAACGCCATCGTCTTCTCCTACGGCCACATCAAAGTCATTGACATGGCCAAGTCTGGAGCTGTTCTGAATATAATCGGCGTGCTTTCCATCAACCTGGCCTTGAACACCTGGGGGACAGCCATGTTCGGATTGGACACGTTTCCGTCCTGGGCGAACACCACTGCCAAATACCCCTGAACACACGAGGTGTAACACacaggggagaggaggggagggagagactCGGGGTCTGTTATTTGCACATCCGTTCCTCTGTGTCAGAGGAGGGGCCTGACATGGACTCACAGGACTGGAAAAGCACCCCCACGGTCTACTCCCCTGCCCCACACAGCCCAGCAACACCGATGCAGAGTTTCCATCTCTGGTCTTCAGACTTGTCGACTGTCGCAGAATCTCATCTTTTTCTAATTTCATCATGAAGTGGTGGAGATGGAGGGAGGCGAAATCGTACTGTGACTTCACAGCATATATGTGTTCAACATAGATATTTGGATTTTGACCGGTATATTCTCTATTCAATTTAAGCAGCCATTTTAAGAATTTGTTTGGTTGCACAATCCTTATTAAATAAGGAGGCTAAATGAGATTATTAATGTCCTTCAACGCCATGTTTTCTGGAGGAATCTGtctattatatacatttgtccTGTTCTAATCCTGTAATTCTGCCTTACAGTCCCAAGAACAAACCATGTGAATttggctttttctttctgttattgAAAGATGTCTTCTATGCACTGTTTTTAGTGAATTACTtggaaatattatatattcatagcATTTTTGagatgaatatataaaaatatatcacccGCAGTGCCTGTATTTATtagtttcatattaaaatgtgtaaaaccgCATTTAATCTGAGGGCTGCGATCGAGTACTCAACTTTAAATGCAGTCTGTCACCCGGTATTGAATGGCAATAATGCTTCTGTTGCCCTGATCTCTCTCATTGactgttgtgtattttaaaattatataatcacGCCATTGTTTTGCACATTAAACTTTTTAACCTTTGTAGACGGGGTGATAGCATGACGTAAAGTTTGTAGAACATGTTTCACCTCCTGTATCTCTCAGTCAGGAGACTGTAACTCCAGGTCAGCCCTGCCAAGCTGGGGGTGCACTGCGTTTCCCTTGAGGCTGGGAGCGGGGGTTGACCTGTGGGGGGTACCTGTAGGATCCCCGGCGACTGTAAGAGCTGTCAGTGTGCAGGTGAAATATGTATCCGACTCCCCATCACCTGGGGTGGTCTGCTGCTCCTTGTTTACACCTCTTTAAAATGACAGATCCCTTTTCCGTActgtacaaacaaaatacacacacacgtattcCTCTATTTCACATTCCTCGCAGCCCGCTTGGCTCACAGATAATCCCACTGTAAGGGTTATTTTATAATCTGGCATCGCAGTCCGGTGCAAAGCATGACAGGTGGGAAACCTGCCCCCGATTCACTGCCTCATCCAAAGGgaaatttcatatatatttatgttttcgGAGTTTGTGTCTCTAGTGTCTTGTAACGACTTGCTAATGTACCAGGAAATGACTGTGAAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193982 lncRNA downstream 12163 8729803 ~ 8730149 (-) True G154010
TU193946 lncRNA downstream 154090 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 720672 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 758381 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 867270 7874787 ~ 7875042 (-) True G153742
TU194132 lncRNA upstream 234913 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 343303 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 343303 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 345804 9098172 ~ 9103435 (-) False G154150
TU194169 lncRNA upstream 376402 9128770 ~ 9139826 (-) True G154157
AMCG00005761 mRNA downstream 14220 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005758 mRNA downstream 50581 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005740 mRNA downstream 81133 8645588 ~ 8661179 (-) True AMCG00005740
AMCG00005741 mRNA downstream 100622 8637800 ~ 8641690 (-) True AMCG00005741
AMCG00005739 mRNA downstream 134254 8606283 ~ 8608058 (-) True AMCG00005739
AMCG00005762 mRNA upstream 11539 8763907 ~ 8764149 (-) True AMCG00005762
AMCG00005760 mRNA upstream 12143 8764511 ~ 8770868 (-) True AMCG00005760
AMCG00005795 mRNA upstream 24488 8776856 ~ 8786521 (-) True AMCG00005795
AMCG00005792 mRNA upstream 34438 8786806 ~ 8792875 (-) True AMCG00005792
AMCG00005794 mRNA upstream 43942 8796310 ~ 8802157 (-) True AMCG00005794
TU193709 other downstream 617627 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 740972 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 953991 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2245741 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2659446 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 338054 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 672922 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1563012 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1563012 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2091473 10843841 ~ 10912745 (-) False G154677

Expression Profile