RNA id: AMCG00005760


Basic Information

Item Value
RNA id AMCG00005760
length 2025
RNA type mRNA
GC content 0.64
exon number 11
gene id AMCG00005760
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8764511 ~ 8770868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGCACCCCCCCTGTGGTCAGTATTGCAGGACAGAAGCTGCCACCTGACTGAGATCCGGATTAACAACAACAGCCACCACCAAAAAAGGGATGCAGTCCGAGGGCCACAGACGCGGCGCAGGTGCGGGCGGCCCATGCTCTCCCTGCTGCTTTCTCTGCACAAGCTCTGCAAACTTTTCTCCATGTTCAGTTCCGACAGACTCACGGTACCCGAATACGTGAGCCGGCTCCAGAGTCGGAAGAGCGGCCCGGACCCCAAGGCTGTTTCGCCCGGGGTCAGTGCGGACGCGCAGAGGGCTCTGGACAGCTCCCTGCCGCCGCTCCGGGAAGCCATCCAGACCCTGAAGTCGTCCCGCAACAACGCCGACCCCCGGGAGTCCAGAGGGGCCATCGCCACCATCTTCCAGCTGGTGGAGGAAGCGTGGGTGCTGCCCGCGGTCGGCCGGCATGTGGCCGAAGAGCTCTGCAACAAGATCCGCCTGGAGGGCGGCCTGGAAGCGCTGCTCAAACTGCTGCACACCCCCGAGCTGGAGACCAAGGACTACGTGGCACGGATGGGCCTGGGCGTGATCCTGAACCTGACCCGGGAGCAGGAGGACGCCCAGCTGGCCCGCAGTGTGTCGGGCATCCTGGAGCACATGTTCAAGCACACGGAGGAGACGTGCGCCCTGCTCATCCACAACAGCGCCCTGGACGCCCTGTTGTTCTGGTGCCGGGGGACGGACCCCACGGTGCTGCGGCACTGCGCCATGGCCCTGGCCAACTGTGCCATGTACGGAGGCCACACCTGCCAGCGGCTCATGATCGAGAAGCGGGCGGCCGAGTGGTTGTTCCCCCTGGCCTTCTCCAAGGAGGACGAGCTCATCCGCTTCCACGCCTGCCTGGCGGTGACCGTGCTGGCCGCCAACCGGGAGATCGAGGCGGAGGTGGTGCGCTCGGGGACCCTGGAGCTGGTGGAGCCCTTCATCGCCTCACTGGACCCCGAGGAGTTCGCCCGCAGCCTGCTGGACAGCGCTGACAACACACAGGGCCGCACCGCTGCTGACCTGCAGCACCTCCTGCCCCTGCTGGACGGGCCACGGCTCGAGGGCAAGTGCATTGCCGCGTTCTACCTGTGTGTGGAGACCAGCATCAAGTCCCGCCAGCGCAACACCAAGATCTTCCAGCAGATCGGCGCGGTGCAGAGTCTGAAGCGCATTGTCATGTACTCCAGCAACGGCACCACCTGCTCCCTGGCCAAGCGGGCGCTACTCATGATGGGCGAGGATGTGCCGCGGCGCATCCTGCCCTCTGTGCCCAACTGGAAGGCCTGCGAGGAGCTGCATGTGGATGGGGACCTGCTTCTGAACATCACCGACCTGGACCTACAGAACGACTTGGGCATGACCTCCGGGCTCACCAGGAAGAGGTTCCTTCGGGAGCTCCGGGTGCTGAAGACCTACGCCCACTACTCCACCTGCGACCCCAGTAACCTGGCGGACTGGCTGGGGGTGGTGGACCCGCGGTTCCGGCAGTACACCTACAGCCTGGTGCAGTGTGGCGTGGACCGGAAGGGCCTGGCACAACTCACCGACCAGCAGCTCCAGGCTGACTGCCACCTGGACAATGGCATCCATCGCAGTAGGATACTGGCAGCAGCGAAAGGCGCTCAGCGTCCGTCCCAGCTCTGCGACAGCCCCACCCAGCACCCGGGACCCGACGTCTTCATCAGCTACCGGAGGTTCGAGGAGAAGCTCATCCAGAGCGTTCAGAGGGCGCGCAACTTCATCCTGGTCCTGTCTGCCAACGCGCTGGACAACTGCATGGGTGACCATGCCATGAAGGACTGGGTGCACAAGGAGATTGTCACGGCGCTGAAGGGCCAGAAGAACATCGTCCCGGTCACCGATCACTTCGAATGGCCGGAGCCCAGCTCTCTGCCCGACGACATGAGCGCCATCCTCAACTTCAATGGGATCAACCAGGACATGACCGACGGCCCGGAGGTTCCGCAGGACACTGAGGCGCCACACCATGGATAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193982 lncRNA downstream 34362 8729803 ~ 8730149 (-) True G154010
TU193946 lncRNA downstream 176289 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 742871 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 780580 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 889469 7874787 ~ 7875042 (-) True G153742
TU194132 lncRNA upstream 216413 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 324803 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 324803 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 327304 9098172 ~ 9103435 (-) False G154150
TU194169 lncRNA upstream 357902 9128770 ~ 9139826 (-) True G154157
AMCG00005762 mRNA downstream 362 8763907 ~ 8764149 (-) True AMCG00005762
AMCG00005759 mRNA downstream 12143 8742312 ~ 8752368 (-) True AMCG00005759
AMCG00005761 mRNA downstream 36419 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005758 mRNA downstream 72780 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005740 mRNA downstream 103332 8645588 ~ 8661179 (-) True AMCG00005740
AMCG00005795 mRNA upstream 5988 8776856 ~ 8786521 (-) True AMCG00005795
AMCG00005792 mRNA upstream 15938 8786806 ~ 8792875 (-) True AMCG00005792
AMCG00005794 mRNA upstream 25442 8796310 ~ 8802157 (-) True AMCG00005794
AMCG00005793 mRNA upstream 34283 8805151 ~ 8818446 (-) True AMCG00005793
AMCG00005796 mRNA upstream 47806 8818674 ~ 8819107 (-) True AMCG00005796
TU193709 other downstream 639826 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 763171 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 976190 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2267940 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2681645 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 319554 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 654422 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1544512 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1544512 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2072973 10843841 ~ 10912745 (-) False G154677

Expression Profile