RNA id: AMCG00005761


Basic Information

Item Value
RNA id AMCG00005761
length 1431
RNA type mRNA
GC content 0.67
exon number 6
gene id AMCG00005761
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8721853 ~ 8728092 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTTCCGTTCCATGCCCAGGAGGAGTCGGGGGCTGGCGAGGGTCCCCTCTCTTTCCAGCAACGAGAGGACGCACTCTATGGGCCGAAGAGCATCTCGGCGGAGAAGTATCGGCGCCACAGCACAGACGGCGTGACGGGGCCGTGCCTGGTTGAGCTCGGCCGCTTCCACCCCTATCGCCGTCAGTACAGCGCGGATGCGGGAGACCCCCGCTCCCCTCCGCACTGCCCTCCCCCGGGCTTCGGCTGCTTCGAGGGCCTGGAGATCTCGGAGACCCTGGAGCAGGAGAGCCGCCAGATCTGTCCGCCGGAGGTCACGGTGTCGTGGGCCAATGTGGGACTGTACAGCGCCGGCCAGCACAGCGCCAGGCTCACGGGTGCACCGGCCAAATACCCAGACATTCCTCCGGCACCAGGCGAAGCCAAGTTGAAGCCTCCTGGTTACCCCTCTCACCTGCAGCCGACCTTCGGCCCCGCCTCCTCCCTGCCACAGTTCCCCACGGGCCGAGTCTATCCTGGCATGGGAGCGTCCGGCACAACGCACTATGGCTTCCCCTGCAGCTCGCCCCAGTGCTCCCAGGACGCCCAGCAGACTCTGTACCCCAAACCCATCTACTCCTACAGcATCCTCATCTTCATGGCCCTGAGGAACAGCAGGACTGGGAGCCTGCCAGTTAGTGAGATCTACAACTTCATGACTGAACACTTCCCCTATTTCAAGGAGCTGGACCGGCTGCTGGGGGACAAACCGGAGAAGTTCAAGGCGCTCTCGGCACCGCCCCCCCCAGCGGGCAGCTTCGGGCACCGTCTTCTGACAAGGGAGGCGGGCAGCTTCGAGATGCCCCCCTCCTACGGCGCAGCCCGGCCTGGCACCGCCAACCCGGCACTGAGGTGCCCACCACAGGGCCGGCCCATCCGCCAGCAGCCCCCCTACCTGCCCCCGGCCACCCCTGCCTTCTCGTACTTCTCCCCGGGGATCCCCCCCGGGACGGGCAGCTTGGACTCCCCCGTGCCGGTGCagagcccccccgcccccggtGCCGCCCTGCTGGCCGAGCACTGTGCGTCCCGGAGCAtgcaggagctgctgctggagggGGAGCTGAGCAACGACATCGACACGCTCAACCCCAGCCTCACCGACCTGCAGCTGCACGGAAACCTGTGGGAGGAGCTGAAGGATGACAGCCTGGCCCTGGATTCCCTGGTTGTCATCGCGACTTTGCCCTCCTCCCCGTTTCCAGACCATGCCCAGGACGGGTTCAGCTCGGTGGGCAGGGAGCCGAGCGTGCCCAgtgcggaggaggaggaggaggaaggcaaCCTGGCCGACGTGTGCATCACGGGCATCTACTCCACCGCCTTCTCCAACCTGGAGCACGTGAGCTACCTGTCCGCACCCACAGGCACCGCCATACCCCTGCTATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048538 thymus development biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193946 lncRNA downstream 133631 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 700213 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 737922 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 846811 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 1443088 7278504 ~ 7278765 (-) True G153681
TU193982 lncRNA upstream 1711 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 259189 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 367579 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 367579 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 370080 9098172 ~ 9103435 (-) False G154150
AMCG00005758 mRNA downstream 30122 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005740 mRNA downstream 60674 8645588 ~ 8661179 (-) True AMCG00005740
AMCG00005741 mRNA downstream 80163 8637800 ~ 8641690 (-) True AMCG00005741
AMCG00005739 mRNA downstream 113795 8606283 ~ 8608058 (-) True AMCG00005739
AMCG00005722 mRNA downstream 191991 8528521 ~ 8529862 (-) True AMCG00005722
AMCG00005759 mRNA upstream 14220 8742312 ~ 8752368 (-) True AMCG00005759
AMCG00005762 mRNA upstream 35815 8763907 ~ 8764149 (-) True AMCG00005762
AMCG00005760 mRNA upstream 36419 8764511 ~ 8770868 (-) True AMCG00005760
AMCG00005795 mRNA upstream 48764 8776856 ~ 8786521 (-) True AMCG00005795
AMCG00005792 mRNA upstream 58714 8786806 ~ 8792875 (-) True AMCG00005792
TU193709 other downstream 597168 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 720513 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 933532 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2225282 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2638987 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 362330 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 697198 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1587288 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1587288 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2115749 10843841 ~ 10912745 (-) False G154677

Expression Profile