RNA id: AMCG00005764


Basic Information

Item Value
RNA id AMCG00005764
length 3425
RNA type mRNA
GC content 0.57
exon number 15
gene id AMCG00005764
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9397125 ~ 9406873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTTGAAGATGGCGGCTGGAGGTGAGCAGCAGCAGGCTCACAGAGCCGGggtttacaaacagaaaaacaagcaacacaAACACGGAAAGCACCGGACTAAGGGCGAACTGGAACGGGACAACAAGGGCCGTGTGGAAGTGAAAGCTCTCAGTAAGAAGCAGAGGAAGGAGTTGAGAAGGCTGGACCGCCGACACAAGGCCAGTCAGCTCCGCCAGAACAAGAAGGACTCGGTCCTGTCAGAGAAGCGCAAGCTAGGCAGTAAGGATGGCCCTCCTCACTTGGTTGCCATCATCCCACTGCATGCTGGGATTGATGCACAGGGCGCCATGAAGCTGCTGCAGAGCGATGAGACGGGAGTGGTGTGCGAGGGCGTGGCGGGGGGCACCAGCTTCGGGGTCCTCCTGCCCCGCTTCAAACAGAGATTCATCTTCCTCAGGCCAGACCCAGCTGACCTGCATGCTCTCCTGGACATTGCCAAAGTAGTGGACACCCTGCTCTTTCTGCTGGACCCGGTGGAGGGCTGGGACAGCTATGGAGAGTACTGCCTATCCTGCTTGTTTGCACAGGGCCTGCCCAGCTATGCGCTGGTGTGCCAGGGTTTGTTGGAGATGCCGCCGAAGAGACGGACAGAGGCGCGGCGGGCACTGGGCCGGGTCACAGAGCCACGCTTCCCCGAGGGCCGTGTCTTCGGCCTGGACTCGGCGCCGGAGGCCATGCTGCTGCTGAGACACCTGGGCGCACAGAAGCAGCGGCGCCTGGCCTTCCGCTCTCGCCGCCCTTATCTGCTGGCCCAGCACGCCCAGTTCCAGCCAGGGCCGGGTGGGCCTGGGGGGCTGGGCACTCTGAAGGTGTCGGGCTATGTGCGGGGGCGGCCGCTCAGCGTCAACAGGCTGGTGCACATCTCCGGCATTGGTGACTTCCAGCTGAGCCAGATCGACGCCCCGCCGGACCCCCTGCCCTTCACCCCCCGCGAGCGTCGGCCAGGCAAGGGCGGTGATGATGGGGGTGCTGTCGGTGAGGAAGACGTGAAGGTGCTGATGAGAGTGGACCCCGGGCGGCAGGAGAGCCTGCAGGCAGAGGCGGAGCTTGACCCCATGGATGGAGAGCAGACCTGGCCGACTGAGAGCGAGCTGCAAGAGGCCGAAGAGAGGCAGAAGAGGGTGAGGAAGGTGCCCAAGGGAACGTCGGACTACCAAGCCTCCTGGATCTTGGAGGTAAacgagggagaggaggaggagcaggagagcagcgatgaggaggaggaagacgaaGACATGGAGGAGCTGGAAGAGGAGATAGACGATGAGGATGCGGACTCTCAGGACTGGGAGCGCAGCCTGGAGGAGGGCTCCAACTCGGAGACAGAGACGGTGGATCTGGACCGGGACGGACCGGAGCAGCGTTACGATGACAAGATGGACCAGCAGGAGGAGAGTGAGGCCCTGCGGCGCTACAGGGAGGCCCGCGCTGACCAGATGTTCCCTGACGAGGTGGACACCCCGCTAGACATCCCTGCCAGGACCAGGTTCCAGCGGTATCGCGGCCTTAAGAGTTTCCGCTCATCGCCCTGGGACGCCCTGGAGAACCTGCCTGCCGACTACGCCCGCATCTTCCAGTTCCAGGACTTTGAGCGCACGCGCAGACGCGTCTTTGCACAGGTggccgaggaggaggagggcgcCATGGTGGGCTGGTATGTGACCCTTCACGTCCAGGATGTGCCGGCCTCAGTGATGGACAGTTACCAGAGTGGACGCCCTCTGGTCCTCGTCTCGCTGCTGCCACATGAACAGAAGCCAATCAAATCGAAGGAGGAGCTGGTGTTCCAGTGTGGGTTCCGGCGGTTCCGGGCCTCGCCCATCTTCTCCCAGCACACCTCAGGAGACAAGCACAAACTGGAGCGCTTCCTGAAAGCCGACGCCCCCATGGTGGTGTCTGTCTATGCCCCCATCACCTTCCCCACCGCTGGAGTGCTGGTGTTCAAGCAGAGAGAGAATGGAATGCAGGACCTGATCGCCACAGGCTCCCTGCTGAAGGCTGACCCGCAGCGCGTGATGGTGAAGAGGACCGTGCTCAGTGGGCACCCTCTCAAAATCCTACGCAGGACGGCTGTGGTGCGCTATATGTTCTTCAACAGGGaggACGTCCTGTGGTTCAAACCTGTGGAGCTGCGCACTAAGTGGGGTCGGCGGGGCCACATCAAGGAGGCTCTGGGAACTCACGGCCACATGAAGTGCGTGTTCGACAAGCAGCTGCCCTCCCAGGACACCGTGCTCATGACCCTGTACAAACGCATCTTCCCACGCTGGACTTACGACCCCCACGTGCCCCAGCCGCTGCCCTGGGTCAAGGACGAGGTCACCATCGACACCGAGGACATCGACATGGAatagaaagagacagagactgaGATTGAGTTGCCACGCTGTGCTGCCCTCTACAGTTTGGAGGATGGATCTGCAGGAAGGCTGGGATTTCCTCTCCTATTGCCTTTtcgaggtgttttttttttttattttcagtccaGTGGGCACCCACAGCTCTTGCTGTGAGTCACAACCGAGGCGGGATAGAAGTGTGTTTGGGTCGGGATGGTAGAACTCGGACCCAAACCACCGATGTCTGAATAGTTAAATTATACACAATTGCTCTCTCATCCCTGGTCTGCACATCTGTGATCAAGTGCTATCAGGTTTTTAACTCCTACTATTCCTGCTTAAAACATTTGCTTGAATTCTAGAGAGACTTAAGTCAACCCAACAATATTATCCTGCTGTTCTAAGATCATATTTAATCTGGTTTTCCTTTGACTTGACTTAAGTTAGAAGTGAGAGTGCTGTTGCTCTGCGTGGATCGGTCTTTATTAAAAGATTCCCAATGCCAGTCCACTTAACTATCAGTTATGTTGTCCTTTACTGTCTTTATATGATATGACATggggaaattaaagaaaagctgTCAGAATGCCACACTAAACTAAACCTACACAACAAACGCAAAGGCAGGGCTTTGACTTCAGTGAGTAGGACCATGGTAGAGCTGGTGAGTTTTCACTTCCTTGGTCTTCCACTAGATGGCAGTCATGCATCAGGCCACGCTGTCTGTTGCCCCATATCAATTAGCTGTTGTAGGCCTCCCATCTATGGCAGGAAATGTTACAAAACCTCACTGTAAAAAGTGCAGTTCAAAGCCAAGGTGTTTGAATAATCAGATCAGAAACTAATGGTGGCAACATCTGGCTGGGGGGTGGGAGTCTCCTATTTCAgtttctgaaatgtgttcaggGTCTTTTTCACTGGAGAGGTCAGTCGTGTAGGTTGACTGGTTGACCAGGTGCAGAATCCCCTATGATCAACCAAGTGAGAATCTGCATTCAACCGCTTCATTTCAAcccaataaaaaacaacaacaactgtcatatata

Function

GO: NA

KEGG:

id description
K14799 TSR1; pre-rRNA-processing protein TSR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194189 lncRNA upstream 202938 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 288755 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 288755 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 302455 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 325378 9021950 ~ 9071747 (+) True G154091
TU194291 lncRNA downstream 33620 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 498899 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 671434 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 860400 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 878641 10285514 ~ 10332094 (+) False G154447
AMCG00005783 mRNA upstream 47704 9346443 ~ 9349421 (+) True AMCG00005783
AMCG00005784 mRNA upstream 66535 9299585 ~ 9330590 (+) True AMCG00005784
AMCG00005775 mRNA upstream 127889 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005774 mRNA upstream 145295 9240634 ~ 9251830 (+) True AMCG00005774
AMCG00005750 mRNA upstream 216320 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005763 mRNA downstream 18434 9425307 ~ 9427544 (+) True AMCG00005763
AMCG00005767 mRNA downstream 392124 9798997 ~ 9808730 (+) True AMCG00005767
AMCG00005768 mRNA downstream 454046 9860919 ~ 9868588 (+) True AMCG00005768
AMCG00005808 mRNA downstream 500973 9907846 ~ 9921070 (+) True AMCG00005808
AMCG00005807 mRNA downstream 534589 9941462 ~ 9943324 (+) True AMCG00005807
TU193852 other upstream 890050 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1166535 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 2131154 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2908505 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 4175210 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 29027 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 180929 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 474509 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 658287 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 673562 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile