RNA id: AMCG00005766


Basic Information

Item Value
RNA id AMCG00005766
length 762
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00005766
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9475577 ~ 9479846 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGCGACTCGCTTTAGTGCGCTGCAGTACTCCTTCAGCACAGAGaaattcatcatcatcataaaaacacGAATCACAATAAGCAAGACCCAACAGAATGGGGAAGAGAGAGGTGGCGATCTCGTGCACACTGTGGCCAGCAGAGACCCCGGCAGCGAGACGCGCTCGGTGCTGCAGGAGCAGACGACAGCGCTGGGTCTGGCCATGTTCGCCCTGCTGGTGCAGCGCTGCACTGAGCTGCTGAAGGAGACGCCCAGGGctcccCCTGGCGCGGACGAGAGTGAcggtggggaggaggagggggtggtcAAGGTGTCGTCCTTCCTTTTAGACCTGCGGGAGCTGCTGCCATGTGTGAAGGTTTGGTCAGACTGGATGCTGGGGCAGCCAGAGCAGTGGAACCCGGCTCCGCCCAGCCTGCCTCTGCCCATTGGCTGTGCCCCGGACGTCTGGCAGTGCCTGGCGGAGCTGTGCAACGTGCTGGCGCTGGTGAGCCAGGCGGAGGTGCCGCTGTACAAGGACCCCGACGAGGAGCTCAGCCTGCTGGTGCTGGAGGAGGACCGGCTGCTGTCAGGGTTCATCCCCTTGCTCGGGGCACCCCAGGAGCCCTGCTACGTGGACAGCGACTGCGACAAGGTCAGGACCCTCCCCCTTCCTGGCCCCCGCCTCTTCACCGCTCCCATAGGGATAGCGGTGGCACTGGTGGGCACAGAGAGACGGGCAGTGCTTGTGTGCGCAGCAGGGGAAGGGGGCTACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194299 lncRNA downstream 37678 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 82244 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 143544 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 145044 9325522 ~ 9330533 (-) True G154234
TU194169 lncRNA downstream 335751 9128770 ~ 9139826 (-) True G154157
TU194320 lncRNA upstream 92369 9572215 ~ 9572908 (-) True G154280
TU194453 lncRNA upstream 609708 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 657582 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 664637 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 1063688 10543534 ~ 10545603 (-) True AMCG00005862
AMCG00005765 mRNA downstream 12516 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005785 mRNA downstream 104155 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005786 mRNA downstream 135847 9334059 ~ 9339730 (-) True AMCG00005786
AMCG00005777 mRNA downstream 192837 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005779 mRNA downstream 269116 9203915 ~ 9206461 (-) True AMCG00005779
AMCG00005773 mRNA upstream 20182 9500028 ~ 9508536 (-) True AMCG00005773
AMCG00005771 mRNA upstream 41452 9521298 ~ 9535270 (-) True AMCG00005771
AMCG00005772 mRNA upstream 93091 9572937 ~ 9580695 (-) True AMCG00005772
AMCG00005770 mRNA upstream 107953 9587799 ~ 9589780 (-) True AMCG00005770
AMCG00005780 mRNA upstream 129245 9609091 ~ 9625629 (-) True AMCG00005780
TU194289 other downstream 40637 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 383004 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1350892 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1474237 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1687256 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 835534 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 835534 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1363995 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1426449 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 1430670 10910516 ~ 10912745 (-) True G154677

Expression Profile