RNA id: AMCG00005768


Basic Information

Item Value
RNA id AMCG00005768
length 2558
RNA type mRNA
GC content 0.62
exon number 10
gene id AMCG00005768
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9860919 ~ 9868588 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCATTGTGGCTCGACGTGCGTGGCCGTTGAGTTATCCTTGTGGCTGCCTGCGCGGAGAATGGACCTGCCGTGTCCGGAGTGGCAGAAACACGCTGCGCAGAAGTGGGATGCGCTCTCTTCCGCCAAGAAACAAAGCTTCTCTGCGCTCACAGACGAGGCGGAGATACACGCTTTCTGTGTCTCTTTGGTGAACGCTGAAGATGTGGAGTTCCTGACAGGCATTGCTCAGGGCTACTCTGTGCAGAAGGACCCGCAGTCGGCCCGCTTGTCCAGAGAGCAGGGAAACGGGCACTTTAAAAATCGAGACTACGCGGCATCTGCACTGTTCTACTCCCAGGGCGTGTGCCAGGCAGACCCGGGCACCGAGGAGCTGGCACTGTGTTTCGCCAACCGCTCGGCTGCCCTTGTCCACCTCGCACTGTACAAGGAGTGTCTGGCAGATATTCGCCGGGCCCTGAGCAATGGATACCCCAAACCCCTGGAGCCTAAGCTGCTGGCACGACAGGCGGATTGCCTCTCCCAGCTGGGGGGTGCAGGGGAGGAGTCCTGCCTGCCAGACAGAGGAGGAACGGAGCAGCTGGCATCACAGACAGGGAGCATTCAGGGACCCGGCGCTGTGGCCGGTGCCTCGGCTGCTGTGGCTCTGCGATACGAGCCCAGCAAAGGACGGCACCTGGTGGCTGTAGAGGACATCGCGGCCGGGGAGGTTATACTGGAAGAGAGGGCATACAGCTGTGTGTTGATCCCTGAGGAGACAGTTGCACCAAGGGTGGAGAGACGGGGGGTAGCCGGCACCGAGTACCGGCACTGCCATCACTGTCTGCGTCCGACCCTCTGCCCCCTGCCGTGCCAGAGCTGCAGCTTTTGCCGTTACTGTGGCGAGGGGTGCCGGGACCGGGCGTGGGAGGGGTACCACCACTGGGAGTGCAGTGTAGGGGGGGAGCTGCTGGCTGCAGGGGTGCTGGCCCATTTGGCCCTGCGGGTGGCACTGCAAGCCGGGCTGGGGGAGGTCCAGAGGGCACGGGGTCAAAGCCAGTCTGCTCCTTCTGGGCAGTTAGGAGACTCAGAAGAGTGTGGGCAAGGGGCCCAGATAAAGTGTGAAACTGCAGCAAGTAAAGACAAATCAGGCCAGGACATCCTGCCCCCAGAGGAGAGCAGTGACAAGCCTGAGGAATCGAGCCATGAGCCCCCCAGTGGCGGCCCTCTCATCCCAGGCTGTGACCCGGCTGGCTGCTACCTGGGCTCCTCCTACCTGTGTGTCCATCACCTGCTCCCGCACACACATGGCCACGCCCCCCGCCTGCGCTTCCTGTGTGCTGTCACCCTGGCGACGCTCTGTCTCAAGCTGCAGGGTTCGGGGGCTCTAGCCAGTAAATGGGGAGGGGTTTCCCAAACTGACAGGAGCGACGGCCAATCGCAGGGTGAGGCAGAGGATCGAGGCAGTGGCGGGTCGTCGGAGCTGAGCATGCTGGGAGCTGCAGCGCTGAGACACGTGCTGCAGCTGAGGTGCAACGCCCAGGCCGTGACTGCAGTGAGAGACGCAGGTGTGGGCGGCTCAGCTGTCCAGTCCAGCGCCGAAGTCCGCCTAGCCACGGCCATATTCCCCTCCCTCAGCCTGCTCAACCACTCCTGTTCGCCTAACACCAGCATCTCCTTCAGGTCACGCCGTGTCACTGTACGCGCAgcccagccaatcagagccGGCCAGGAGCTGCTGCACTGCTACGGCCCGCACCGCAGCAGGATGGCTGTGAGAGAGCGACAGCGCCTCCTGCAGGAGCAGTATTTCTTCCTCTGCCAGTGTGCCGCCTGCTGCCAGGAGCTGGGGTCAGAGGGTAAAGGTCACGGGGCCGAAGACTTGGGAGTACGGTGCGTCCAGTGCGGCTCTCCTGCTAAGGGCAGCGAGGAGGGGTACACCTGCCCCCAGACGTCCTGCCATTTCACCCTGTCTCTGACGGACCTGTCCAGCAGACTGCAGGCTCTTAGTGGACACGTGGAAGAGGCAGTGAGGCTCATAGTGACGGGCAGACCAGagaAAGCTGTGAAGAGACTGCAGTCAGCCATCACTCAAGCCGACCGTTTCCTCTCCTCCACTCACCCCATGCAGGGAGAGATTGCTGACACAATGGCCAGAGCGTATGCCACCATGGGGTGCTGGGGCCAGGCAGCGGCCCAGTTGCGACGCAGCGTGGCGACAGTGCGCTCCCAGTATGGCGAGGACAGCGTGGAAGTGGGGCAGCAGCTCTTCAAACTGGCACAGCTCCACTTCAATGGCGGGGAGATGCAGAAGGCGCTGACCGTGATACCCAAAGCCCGCCGCCTCCTCGTCCAGCACTGCGGCCACAGGTCGGAGCAGGTGGAGGAGCTGAAGGCCATGGAGGACTGTCTGCGGGGGGTGCTGTAGGGTTGCCCCCACACTAGACTGCACACATCCTGGAGAGAAGTGGCGATGACTGGCCGGACTAGCCTAGACACATTCTAGAAATGTTGGCATTCttgaagaatgtgtttttccctATTTCATGGTTTTGAATAAAGTTATATTTGTTGTACAAA

Function

GO: NA

KEGG:

id description
K24634 SMYD4, ZMYND21; SET and MYND domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194291 lncRNA upstream 419538 9440493 ~ 9441381 (+) True G154252
TU194189 lncRNA upstream 666732 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 752549 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 752549 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 766249 9093909 ~ 9094670 (+) True G154143
TU194391 lncRNA downstream 37184 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 209719 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 398685 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 416926 10285514 ~ 10332094 (+) False G154447
TU194535 lncRNA downstream 434369 10302957 ~ 10303497 (+) True G154451
AMCG00005767 mRNA upstream 52189 9798997 ~ 9808730 (+) True AMCG00005767
AMCG00005763 mRNA upstream 433375 9425307 ~ 9427544 (+) True AMCG00005763
AMCG00005764 mRNA upstream 454046 9397125 ~ 9406873 (+) True AMCG00005764
AMCG00005783 mRNA upstream 511498 9346443 ~ 9349421 (+) True AMCG00005783
AMCG00005784 mRNA upstream 530329 9299585 ~ 9330590 (+) True AMCG00005784
AMCG00005808 mRNA downstream 39258 9907846 ~ 9921070 (+) True AMCG00005808
AMCG00005807 mRNA downstream 72874 9941462 ~ 9943324 (+) True AMCG00005807
AMCG00005806 mRNA downstream 78164 9946752 ~ 9968147 (+) True AMCG00005806
AMCG00005799 mRNA downstream 152379 10020967 ~ 10032822 (+) True AMCG00005799
AMCG00005798 mRNA downstream 175230 10043818 ~ 10052809 (+) True AMCG00005798
TU194323 other upstream 271121 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 422650 9435900 ~ 9438269 (+) True G154251
TU193852 other upstream 1353844 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1630329 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 2594948 7260677 ~ 7265971 (+) True G153675
TU194377 other downstream 12794 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 196572 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 211847 10080435 ~ 10087692 (+) False AMCG00005802
TU194579 other downstream 593949 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 601955 10470543 ~ 10471631 (+) True G154486

Expression Profile