RNA id: AMCG00005771


Basic Information

Item Value
RNA id AMCG00005771
length 2319
RNA type mRNA
GC content 0.63
exon number 12
gene id AMCG00005771
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9521298 ~ 9535270 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTAACAACACACAGCGCCACAGACTGCGCTCCGGCGGGGCTCACACCACCAGCACCGGCCTCCCCCAGCGCTCCCAGTCCCGGGACCCAGGAGCCCCAGACACACCGCCCGAGAGAGGCCGGGGACGAGCTGCGGAGAGGCGGCAAATTTCGTTGGTGTGAGTCAGAGAGACACAATGGCCTTCGCGGCCTACGCAGGCAGGACCCGGGTGAGAGCAGGGGGCGAACAATTAACGGACTGGACGACCAGCATGTCTccgagcgagcgagcgagcgcATCGAGGCaaaaccagaaccagaaccaaAGCATCACGAAGGTGGTCTGAAACGGGAGGGGAAGCGCCCTGCTCTGCAACTGTACCAGCCGGGAGTGTGCCGCCTGCACCCACGCCGGGACACCTCCCTGAGCAGTGAGGGAGAGGGCCTGACCGAACTGGACCAGCACCAGAAccaagaggaagaggaggggggagaAGAAGTGAATAAGCAGGTCAGAGAGGTAGAagtggaagaggaggaggcagagggggcAGGGGCGGTGGAGGAGGTAGGAGCAACAGAAATGTCCCAGGGCACGGTCCAGCAAGGTGACCAGATGGGCGGCACAAACACCAATGTCGGCAAGCGCGCTGCAGATCCTGCCCCTGCCGCCGGTGCATCCCCGAAACCGGCACGCAGGGTACGCAAACCAGACCGGGAGATCTATCAGCCGGGAGGAAGGAGacttcagcagcagcagacaaACAAAGACCCAGGTCCGAGCAGGGAGCCCACCGCTGAGAAAGTCCCGGTGGCTGTGAAGGTTCAGCCAGCAGTCAAAGAAGTCCGGTCCAGCAAGGAGAGTCCGGCCCACAGGGACGTTAAAGCAAACAAGGAGAGGAAGCAGGAGCCGGGGCCGATCAAGGAACCGCCAGCAAAGTGCAAGATTCCAGGGACCGGGAAGCCTTCGGGGAACGGGCAAGACCTATGgcgagggagggagaaggagaaggaggacagCTGGAGCCCCGACCGACGGCCCATCAGTGTCAGGAGCCGgggcggaggaggaggcagCAGGAACACCGGCGGGGTCCTGAGGGTTTCTTTTGACAAAGCGGGCAATAGCCTGACCGCCTCTGAAGTCTCTGAGCAACGGAAGAAAGAGGAGACGGGGCCCAGAGGCAGGGGGAGGGGAATCCTGATTCTTCCCGCCCACACAGACCTGACTGCTGCCCCAGAGCCGGGGCCTCGACTCCTGATCGGGGGACGTGGGGGCAGGGGGCGTGCCAGATACCCCTACCCTTATCACCTCCCCTACCAGATGCCTGGCACCAATGGGgtgtacccccctccccctggtGCCTTGTATTTCTCCGGGTACGGGCAGCCTGGGTCACAGGGATACCTGCCCGCCATGACCCCTGAGGAGGCGGAGGTGCAGGTGCGTGGGCTGCAGCAGCAAGAGCTGGCCAAACTGCTCCGCATCGCAGACAGCCAGGAGCTGCAGCTCAGCAACCTGCTGTCCAGGGATCGGCTCAGCCCAGAGGGGCTGGACAGGATGACACAGCTGAGGGTGGAGCTGCTCATTCTGTACGAGCGCGTAATCCTCAGTGACATCGAGTTCTCTGACACTCAGAACCTGGATCAGGCTCTGTGGAAGAACGTCTTCTACCAGGTGATTGAGAAGTTCCGCCAGCTACTGAAGGACCCGACCTGCGAGGCGATGGAACGGATCAGGACCATGCTGCTGACACTGCTGGATGAGGGGGCCGTGTTCTTCGACGCGCTCCTGCAGAAGCTGCAGACTGTGAAGTATGCTCTGATCAGCGCTCAGCGGTGCATGATCTGCCAGGGAGACATCGCCAGGTACCGAGAGCAGGCCAACGACACGACCAACTACGGCAAGGCGCGCAGctggTACCTGAAGGCGCAGCAGATCGCACCCAAAAACGGACGCCCCTACAACCAGCTGGCCCTACTCGCAGTGTACACGaagCGGAAACTGGATGCGgcagacCAGGTggagcggcggcggcggcagcagcagcagagggagGGGGCATCAGGGGGCGGCCCAGGGCTGCGGGGCGCCGGGGGTGCCCGTGGAGAGGACGCCGCACGGGTGGAGATCTGGGTGCGGCCTGGGGGGCACACATTACCGCGCACAGGCAGCGAGTCGGGCCGGGAGTCCGAGCAGGACAGCGAACTGGGGGCTCTGAGCACCAGCGATagggatacagagCATCACTGCATTATGTTCTGCCACTGGATGGGCAGCGATGATGCACACTGTGGGCCAGCGCGCTTTGTTGCCATCCGCGCCTATGAGAACTGA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194299 lncRNA downstream 83399 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 127965 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 189265 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 190765 9325522 ~ 9330533 (-) True G154234
TU194169 lncRNA downstream 381472 9128770 ~ 9139826 (-) True G154157
TU194320 lncRNA upstream 36945 9572215 ~ 9572908 (-) True G154280
TU194453 lncRNA upstream 554284 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 602158 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 609213 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 1008264 10543534 ~ 10545603 (-) True AMCG00005862
AMCG00005773 mRNA downstream 12762 9500028 ~ 9508536 (-) True AMCG00005773
AMCG00005766 mRNA downstream 41452 9475577 ~ 9479846 (-) True AMCG00005766
AMCG00005765 mRNA downstream 58237 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005785 mRNA downstream 149876 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005786 mRNA downstream 181568 9334059 ~ 9339730 (-) True AMCG00005786
AMCG00005772 mRNA upstream 37667 9572937 ~ 9580695 (-) True AMCG00005772
AMCG00005770 mRNA upstream 52529 9587799 ~ 9589780 (-) True AMCG00005770
AMCG00005780 mRNA upstream 73821 9609091 ~ 9625629 (-) True AMCG00005780
AMCG00005782 mRNA upstream 98514 9633784 ~ 9639483 (-) True AMCG00005782
AMCG00005781 mRNA upstream 138420 9673690 ~ 9679085 (-) True AMCG00005781
TU194289 other downstream 86358 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 428725 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1396613 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1519958 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1732977 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 780110 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 780110 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1308571 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1371025 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 1375246 10910516 ~ 10912745 (-) True G154677

Expression Profile