RNA id: AMCG00005772


Basic Information

Item Value
RNA id AMCG00005772
length 357
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00005772
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9572937 ~ 9580695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGGGTCCTTGTATTTTCAGACTCTGCATATTGGCTCTAGATGGTCTGAGCTGAGCCCCGGTCCCTTCACAGAGGGTTTTCCAGGATCAGGGCCGGAGATCCACGGCTGCTCAACCCTCGCCGTCACATTGAACAAGAAGCAACACGCCCTGGCTCACACCTTCCTAAATATGATATTGAATCTGCGCTGCTTGTGTGGTGTGGTGCTGGCCTTGGTTCAGATGTGTCCCAGGGACCCTGACCTGCTGGCCGCACGAACAGCCCCGCCCCTCCGCCGCTGTTCCGGGCAGCAGACCTCCTCCCCCAACAGTAAGAGTTTATGTGCTGTGGGCGCTTCAGGATCCAGCGCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194320 lncRNA downstream 29 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 135038 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 179604 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 240904 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 242404 9325522 ~ 9330533 (-) True G154234
TU194453 lncRNA upstream 508859 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 556733 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 563788 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 962839 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 995275 10575970 ~ 10576502 (-) True G154575
AMCG00005771 mRNA downstream 37667 9521298 ~ 9535270 (-) True AMCG00005771
AMCG00005773 mRNA downstream 64401 9500028 ~ 9508536 (-) True AMCG00005773
AMCG00005766 mRNA downstream 93091 9475577 ~ 9479846 (-) True AMCG00005766
AMCG00005765 mRNA downstream 109876 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005785 mRNA downstream 201515 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005770 mRNA upstream 7104 9587799 ~ 9589780 (-) True AMCG00005770
AMCG00005780 mRNA upstream 28396 9609091 ~ 9625629 (-) True AMCG00005780
AMCG00005782 mRNA upstream 53089 9633784 ~ 9639483 (-) True AMCG00005782
AMCG00005781 mRNA upstream 92995 9673690 ~ 9679085 (-) True AMCG00005781
AMCG00005769 mRNA upstream 257462 9838157 ~ 9860924 (-) True AMCG00005769
TU194289 other downstream 137997 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 480364 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1448252 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1571597 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1784616 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 734685 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 734685 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1263146 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1325600 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 1329821 10910516 ~ 10912745 (-) True G154677

Expression Profile