RNA id: AMCG00005778


Basic Information

Item Value
RNA id AMCG00005778
length 2628
RNA type mRNA
GC content 0.62
exon number 13
gene id AMCG00005778
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9194432 ~ 9201293 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTTTATTggacaattcaattcaattcagtcaCTTCCtaattatctctctctctctctctcaattgtCCTATCCCCCATCTCTGCATCAcccctcttccctctctccctggccTCCGGCTCCCTCTATCCCCCATACTGTCCTTTTCTCCTCCCCTATCCCCCCTCCaactctctcccctctctctgtcagtaTGTGCTCAGTGTAGTGGCAGGCGTCTCCTGGGAGCAATTCTCCGGGCTGCTGCAGCACCTGTCTCTGTGCAGTGAGGAGCAGCGAAGGCGCTTGGCCTGTCAGCGCTGGAGAGAGGTCTTCTCCCAGCTCTTCACAGACTGCGACTGTGCCGAGacaGGGCTCCTAGACAGACACAGGGTGCTGGTCCTGCTGGAGAATTTCTATGACAGTCAGTGTGAGAGCACCCAGAGAGCCCTGTACAACCCCCGCTGCTGGCCAGTGAGGGAGGCCGAAGACTTGAACCCTGACCTCTGGGATGACTGCAGAACCCAGGAGAGGCCAGAGGAGGAGGAACGCGCAGGGGAGCCTGTTCAGTCAAACGCAACCATCAGTGCTGCCGTCGCCGGGCAGATGAACTCCAAAGCGGCCAATGAGGAAGAcgaaggaggagagagggagatggttGGCTCTGTGGGGGGTGGAGAGGAGGCACCATCGGAGGAAAGGGACCCTTCAGGACAGAGGCATGCGGATACtccgagggagggaggggaacaGAAGGAGGGCGAGTCTGGGTCTGATACTGAATCAGAACCAGAGGAGCTGATCCTGGTTATGGAGACTGGACCTGCTGTTGAGGAACTGGACAACTGGGGCCCAGCAAGGGGGGTGAGCGCCTTTGACCGCAGCACCCTGGACCGGGCCCAGTTCATTCAACAGCTGGAGACGTTCCTGGGGGAGGGGGCCTGTGACAGCACGGCGCGGCGGGAAGTGGTGCAGGCCAGGCGGGGGCAGGCCATCGACGAGCTGTTCGAGAAGTGGGACAACGAGGGGAGGGGCTTCCTGGACAagggagaggtggaggggcTGCTGGACCGCTACAAGGAGGGAACAGAGAGGGCTGCCTTACAGAGAGTTGGCCTCTTGCTTGTGTCTCCAGCTTGGCAGCAGGGCTCCCCTCCTCTCCACAGCGCCGCCTGCCTGTCTCGGGGGCAGTTCCGCCAGCTGCTGGAGGCGGTGGTGCACGAACTGCCGCCAGAGGGAGTGCTTGAGGGTGGCTTCCAGGGGCTGTTGGCGTTCCTGGAGGAGAGCGTGGCACACTCGCTGGCGGAGAGGACACGGGGAGCCGCCCGCAGGAAGTGGCTGGCACAGGTGCAGATGGCAGCGGAGAGTGGGGGGGCCAGCCTGGAGCCTGTCTACAGAGCCGTGTTTCAGAGCCTGTACAAAGACGCAGAGACTTATGGGAATGAAAAGATGATCAGCGCCTCTGTGGCCCTGctggaggggggagagaggctGCGCTACGTGGCCTGCACTGCTGAGGACGCCCCCTATGTGCTGAACCAGGAACTGCAGCGAAGGGCAGCGCCAGTGAGTTTTGCAGCAATGGATGATGGGAAGCCTGTGCACGTCCCTCGGGTGCGTCTCCACGGTGGCCTGCACTTCTTCAACACTGACCGGCCGGAGCCAGAGCGCAGGGGCTCGTTTATCGCCGTACCCCTGAAGGACCCCCGTGGGAGGCCATTCGGGGTGCTGGGCATAGACACCCTGAGAGACCCCCAGGAGAGGAACATCTTCCTTAGGCATGAGATCGACTTCTACCAGggGGTGTGCTCAGCCTTCAGCCAGGCATTCCAACACATACTCACCCGGAGGAACATTTTGCGCATTGTGGAGAGCGCCACCTACTGGCTGCACAGCAGAGTGCCAGGGGTGTGCAGCCTCACCACCTACCTCATGGAGTCCACTGGGGAGAAGCCTATCTTCCCCcaccactctccctctccctgcaggGACTACCTGTTCCGCTGTGCTGACAGCTCGGAGCCGCTGCGCTGCGTGGCGTATGGGGAgaggcggctcgtggtgcccctGCGGGAGCCCAGTGGCCGGGCACTGGGTGTACTGGACATCAGCTCGGGGCCCCAGGCGCAGCTGCAGCCCCACGAGCAGAATGACCTGCAGGGAATGGTGCGCATGGTACAGGCTGCCTGCTGCCAGCTGCTCAGAGAGAGCTCCGGACTGGCAGGGCCCTCAAGAATGCTGGAGGCCGAAGGCGCCGGCGGGGAGCAGCGTGTGGGGCTGCTGTTCTTGCGCTTCATGCTGCAGGACCTGCGCAACTGCGTGCGCCGCCTCGACCACCAATCCTTCGCTGAGCTCAAAAGCTACAAGGACCCACCCCCGGCTGTGCATCACGTGCTGAGAGCTGTGCTGCTGATGCTCTACCCACAGTGGGCGGGGAGCCCGGAGATAGACAGCTGGAGCCAGTGCCGGCTAGTAAGTGATTGTGCCGTTTTAACTGAGAACGATTGCTCCAGTTGGCACATCTGGGTGGACAGTGAGGAGCTGCAAAGGAGTGTGGCAGAGCGGCAGGATGAGGAGGAGCCAGCCACCCATCGGCCTACAACACTGAGGAGAGCCACTTTAGCCCAGCATGCCCTGGTTATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194169 lncRNA downstream 54606 9128770 ~ 9139826 (-) True G154157
TU194161 lncRNA downstream 86069 9095671 ~ 9108363 (-) True G154150
TU194160 lncRNA downstream 90634 9095671 ~ 9103798 (-) False G154150
TU194159 lncRNA downstream 90997 9098172 ~ 9103435 (-) False G154150
TU194132 lncRNA downstream 169553 8987281 ~ 9024879 (-) True G154126
TU194270 lncRNA upstream 124229 9325522 ~ 9330533 (-) True G154234
TU194271 lncRNA upstream 130050 9331343 ~ 9332033 (-) True G154235
TU194274 lncRNA upstream 142462 9343755 ~ 9393333 (-) True G154237
TU194299 lncRNA upstream 234587 9435880 ~ 9437899 (-) True G154260
TU194320 lncRNA upstream 370922 9572215 ~ 9572908 (-) True G154280
AMCG00005776 mRNA downstream 2371 9182515 ~ 9192061 (-) True AMCG00005776
AMCG00005747 mRNA downstream 141006 9043131 ~ 9053426 (-) True AMCG00005747
AMCG00005748 mRNA downstream 163754 9027129 ~ 9030678 (-) True AMCG00005748
AMCG00005744 mRNA downstream 260974 8906411 ~ 8933458 (-) True AMCG00005744
AMCG00005743 mRNA downstream 299117 8886096 ~ 8895315 (-) True AMCG00005743
AMCG00005779 mRNA upstream 2622 9203915 ~ 9206461 (-) True AMCG00005779
AMCG00005777 mRNA upstream 72492 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005786 mRNA upstream 132766 9334059 ~ 9339730 (-) True AMCG00005786
AMCG00005785 mRNA upstream 149141 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005765 mRNA upstream 237768 9439061 ~ 9463061 (-) True AMCG00005765
TU194148 other downstream 101859 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1069747 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1193092 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1406111 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2697861 6490255 ~ 6496571 (-) True AMCG00005674
TU194289 other upstream 223997 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1114087 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1114087 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1642548 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1705002 10906295 ~ 10910432 (-) False G154677

Expression Profile