RNA id: AMCG00005779


Basic Information

Item Value
RNA id AMCG00005779
length 954
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00005779
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9203915 ~ 9206461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCAGTCCCTCACCCAGAGCCTGGGCTCTCCTGCTCCCCGCAACCTAGTGATTGGGGGATCCAAGGGGTGGGAAGGGCAAGAGATGGGCTGCCCCCTACAGGTGGAGAGTGGAAGCCCAGCCTGGAGAAGGAGATCCACCGCATGGTATTACAGCTGCACAACACACAGGCTGCCCAGAGGAGGCGGGACCGGGAGGCGGGTCTAGCCGTGGAAGGGCGTGTCCCCATCGACCCGCTGGCACATGATTGGTTCAGCCCAGACAAGGACACCGTAGAATCCAGGGTGTTCCTGCTGGAGAGGGTCCTGCCAGCTCTGGTGCCTGGAGTGCAGAAActactggaggaggccgagaggaggggagagctggaggaggaagggggagagGCAGGGGAGGCAGAGTCCCGGCAAAGCTTCAACCCCCTCAACTACCTGGGGCAGTGCCTGCTGAGGAGCCCCCCCAGGTCGGGCCCAGGCACTCCCACTGTCCAGCACTCCTACTCTCGGGGGCTGCAGATGGCCAGGCAAGATCTGGAGAGGAGCGGGGTCGATGCCCAGAACAGCCGCCGTTTCGAGCAACAGCTGACAGGGGCTTCAGATGGCCATGGAGagctgcacagtgtctccctgCTGTCGCTCCACAggccctgtgctgtgctgtctgaCTGCCCTGTGCTGTATGCCAGGCTGGCGGAGATGAAGCAGAGGGTGCGGGCGAGGAGGTCAGAGCTACAGCGGGAGGAGAGGACGCAGGACCGGGGAGAGGGGCGCCGGAGGGAGTGTCTGCGGCTGCAGTTCTCAGAGTGGAGCCTAGGGCCCGATGGCACGCTGCCCCTCAGTGTGGTGAGGCCCCCGTCTTTACACAACCTGCCATCCTGCACTGCCATAGGGGAACCAAGCCAGGGCTGGAGCTGTGAGAGTAGGATTGACGCTGGGAAGCAGGGGGATTAG

Function

GO: NA

KEGG:

id description
ko05206 MicroRNAs in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194169 lncRNA downstream 64089 9128770 ~ 9139826 (-) True G154157
TU194161 lncRNA downstream 95552 9095671 ~ 9108363 (-) True G154150
TU194160 lncRNA downstream 100117 9095671 ~ 9103798 (-) False G154150
TU194159 lncRNA downstream 100480 9098172 ~ 9103435 (-) False G154150
TU194132 lncRNA downstream 179036 8987281 ~ 9024879 (-) True G154126
TU194270 lncRNA upstream 119061 9325522 ~ 9330533 (-) True G154234
TU194271 lncRNA upstream 124882 9331343 ~ 9332033 (-) True G154235
TU194274 lncRNA upstream 137294 9343755 ~ 9393333 (-) True G154237
TU194299 lncRNA upstream 229419 9435880 ~ 9437899 (-) True G154260
TU194320 lncRNA upstream 365754 9572215 ~ 9572908 (-) True G154280
AMCG00005778 mRNA downstream 2622 9194432 ~ 9201293 (-) True AMCG00005778
AMCG00005776 mRNA downstream 11854 9182515 ~ 9192061 (-) True AMCG00005776
AMCG00005747 mRNA downstream 150489 9043131 ~ 9053426 (-) True AMCG00005747
AMCG00005748 mRNA downstream 173237 9027129 ~ 9030678 (-) True AMCG00005748
AMCG00005744 mRNA downstream 270457 8906411 ~ 8933458 (-) True AMCG00005744
AMCG00005777 mRNA upstream 67324 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005786 mRNA upstream 127598 9334059 ~ 9339730 (-) True AMCG00005786
AMCG00005785 mRNA upstream 143973 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005765 mRNA upstream 232600 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005766 mRNA upstream 269116 9475577 ~ 9479846 (-) True AMCG00005766
TU194148 other downstream 111342 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1079230 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1202575 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1415594 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2707344 6490255 ~ 6496571 (-) True AMCG00005674
TU194289 other upstream 218829 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1108919 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1108919 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1637380 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1699834 10906295 ~ 10910432 (-) False G154677

Expression Profile