RNA id: AMCG00005783


Basic Information

Item Value
RNA id AMCG00005783
length 2450
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00005783
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9346443 ~ 9349421 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcagtGCAGAGGGAGGGCCTCTGTGGCTGTGTGGCTGTCAGACTGAAGGAGGCTGGACTGAGCTGCCTGTGAACGAGCCGGAGACCTGGAGCTCTAGCACGGGGTGGTAACTTCATTTTCACACCTTGCTCTGCTCAGATTCTAAAAGCAAGTATTATTTTCGACTTTCTACAGTGTTCCCGATTCCTTTGTTTAAACCACTATCAGTGAAATAGAGCTGGAGGACGGTTAGCTTTGTTAACCGATTGTTCTTGCTCTCACATGGTGTTATAGGTAAacagttttttcttctgtgcttGAAGTCGAGCAAGAGCGGTAAACAGAGCAGACCGGGGCTGGGCCGTGTGGACAGCAACACATTAATGACTGTGCGGCAGAGGGGCTGAGAGTGGAGGGACTGACCCGGTGGGGTGGACAGGGCTGGGCAGCACACTCCATTGATCCAGGAGATTCCTGCCGGGGAGAGGAGACCACAGCCGAAAGTGTGTTAGAGGCAATTCTAAACCTACCTTTCACCACCAGCTACTGTCCCTGGACATACTGGAGCTCGGGACTCTGCCTGCCCGGGTGCGCTGCTCCCATGGAGGAGTCTGTGGTGGTCCTGCTCCCGGGGCTGGCCCTGCTGTTCTTGGGTCTCCTCCTGCGGCTGTTCAGGCTCAGGGTGGCAGCGGCGGTAGGGCGGCTAGGTGCGGTGATTTGGCGTCAGCTGGGGGCTCGGCTGCATTTCCCCCTGGATCACTCCGAGAGGCCCCAACTGATCTCTAAGCCCTCAGCCCTGGCCCGCTACCTGCTGCAGCACTGTGGCTCCCTGGCCCGGCCCAGCCTGGTACCCTGGCCCTGGAGTGACCCGCACATCCAGACCCTCCACAGCCAGGCCTGTCCAGTGGGGGACTCCTCGGGGGAGGTGAGCTTCGCTCGGGACCTCCTGGAGCTGCAGGACGGGGGTGTCGTGGCCCTAGACTGGGCGGTGGCCACCCCAAGAGACCGGGGCAAACCCCGGGCACCCTCAGCCACCCCTTCCATCCTCATCGTGGTGCCCAACTGTTGGGGGGGGCTGACACTGCATGTGCTGCGGCTGTGCAGACTGGCACTGGCGCAGGGCTTCTACCCGGTGGTGTTCCACCGCAGGGGGCAGGGCGGCTGCCCGCTGGTCACCCCAGCTCTACAGCAGTTCGGCGACCCTGCAGACCTGATCGAGGCCGTGTCCTACATCCGCTGCCGCCACCCCTCCTCAGCGCTGGTGGCGGTCAGTGAGGGCTCGGGGGCTGGGTTGCTGCTGTCCTACCTGGGGGAGTGCGGCTCCTCCTCCTACCTCAAAGCCGCGGTCTGCCTGTCACCCATCTTCCACGGCCAGCTGTGGTTCGAGAcgcccctgccccccccctaCAGGTGGGCCCTGCTGATCTACCAGAAACTGCAGCTCAGCAGgtatgCCACCACTCTGAGCTCTGTGATGGATGTGGAGGCGGCGCTGCGCTGCTCCTCCCTGCGTGACTTTGAGGAGGCCCTGTTCTGCTCCAAGGGCACTGGGAAGGCGGGGGGCACAGAGCAACCAGCGCCGCTGGACTGGGAGGGGTACTGGGAGAAGAACGAGCCCCTGCGGGATGTGGACGAAGTGGCGGTGCCGGTGCTGTGCCTGAGCAGCTGGGACGACCCGCTGAGGGGGGACCCCCGCACCTCGCTGCCCTTCGACCTCTTCCGGAGCAGCCCCTACTTCCTGCTGGTGCTGACGGGGTGTGGGGGACACTGTGGCCTTGGGGCCGGGGGTCGTGGCGAGCCCTGCTGGAGCCACGCCGCCACGCTGGAGTACTTCCGGGTGGTGGGTGAGTTCCTGCGTGCCGAGGAGAGGGGAGGACTGGGGGGCGGCGGGCTGCTGCCCAGACGCAGGACCAGCACACAGCTGCCCCGGCGGCGGAGAGGCACCGTGCTGAGGAGGGACAGGACCACCCCCACCACCGCGCCCCCCACTGACCAGCCCGACCTGCCTGACCTGTTCCAGTGGCACAGATCCTACACCCGCTGAGCAGAGAGACAGTACCTGCCGAGTAGAGATGGAGGAAAAAGATCCTACACATACTGATCAGACAGACAGATCCAATACTCGGAGCAGAtcggggaggggagagaaagggggacaGGTCCTAAATGAGAACGAGTAATGTCTTTCTTTActaaacctttttaaatgattttttttaactccaaGGTTAAGATGATTATCTTACTCATAAGTTACAAAGgactgcctttttaaaaataaaaaataaaataaaaaccacactCTCGGACTACATTTGTACATGCATTTCTTAGAAGAAAAAAGCGATGCCGCAGTGGAGTGAATGACAATACAGGGGTCGGCACACAGTCTTGCCTACTCAGACTAAACCTGTTTATACTTGAGTGATATTCTCTGTAACGCGTGGCAGGATTTTGCCGCTACCCTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194189 lncRNA upstream 152256 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 238073 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 238073 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 251773 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 274696 9021950 ~ 9071747 (+) True G154091
TU194291 lncRNA downstream 91072 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 556351 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 728886 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 917852 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 936093 10285514 ~ 10332094 (+) False G154447
AMCG00005784 mRNA upstream 15853 9299585 ~ 9330590 (+) True AMCG00005784
AMCG00005775 mRNA upstream 77207 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005774 mRNA upstream 94613 9240634 ~ 9251830 (+) True AMCG00005774
AMCG00005750 mRNA upstream 165638 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005753 mRNA upstream 182227 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005764 mRNA downstream 47704 9397125 ~ 9406873 (+) True AMCG00005764
AMCG00005763 mRNA downstream 75886 9425307 ~ 9427544 (+) True AMCG00005763
AMCG00005767 mRNA downstream 449576 9798997 ~ 9808730 (+) True AMCG00005767
AMCG00005768 mRNA downstream 511498 9860919 ~ 9868588 (+) True AMCG00005768
AMCG00005808 mRNA downstream 558425 9907846 ~ 9921070 (+) True AMCG00005808
TU193852 other upstream 839368 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1115853 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 2080472 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2857823 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 4124528 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 86479 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 238381 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 531961 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 715739 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 731014 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile