RNA id: AMCG00005786


Basic Information

Item Value
RNA id AMCG00005786
length 3527
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00005786
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9334059 ~ 9339730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGACACCCAGGCAGGCAGCTCCTCCGGCGACTCCTGGAGAGAGACCTGCCGCCCCCCTCTGAGTACAGCTGTCCGGGGCCTACCTGGATACGGCCTCACATGAGGCTGCCCAGTGTAGACACACAGTACTATGTGCAGCTTCTCCTCTGCCAACAGCGGCCCAGGCACTTCTGCATGGACACGCCGGTCCAGTACAACGAGACCATCCCCAACAGTGGTCCACACCGCCCCATGCGGGCGCAGTATGGGGAGTACCGGTACTGCCCTCCGCAGCGCTGGGTCTACAACCTGGAGctcgGGGGGGTTGTCTTCCTGTACCACCCATGTGTCCAGCCCTCCCTGCGGGCCCAGCTGGCTGCCCTGGCACGCTCCTGTGTGCCCAAGCACATCATCACCCCCTTCCCAGGCCTGAGCCCTGCGCGGCCTCTTGCACTCGTCTCCTGGGGCCGCACGCTAGAGATGTCCCATGTGGCCCTGTCGGagctctctgattggctgcagCAGAACATGAACCAGTCTCGGGAGTGGCCAGAGCGCCGCGGTGGGCGGTACCGTCTGATGCTGGTACACCCCGCCACCCTGGGGTCGAAACACGTCCACAACAGGGGGTGTGCCCAGGCCAGCCTGTGGGCCCTCAGTCAGCAGTTCAGAGAGACGCCCACTACCCTGTGGGGAGAGGAGatgaggagaggaggagaggggagggaccAGAGAGCTGGCTGGGACatcaggaggaggaggaggaagagagagattgGGAGCCCAGGACCCAGAAAGAGAAGGAATAAGAAAGACGGAAACAAGATTCCTGGTTCCAAGTCCAGGGAGGGCCAGGGGAAGGCGGCGGACTACACAGGGCCTAATGACACTGAGCAGCAAGTGAACGGGAGTCGAGTCGGTGCAACCCACGATCCGGGCCAGAGAACTGTGCAGCCTGGGgaggccagggatgagaagacTGAGACAGGAAAACAGCCAGGACACGCGGATTCGCAGACACATGGAGGAGACTCTAAACTGAAGGGGGGCCACAGCGAGGGCGTGGGCTGCACCTCGGTGCCCTGTGCCTGCAGTATGCAGAAGCAGCTCGCGGGGGGCGCGGCGCTGCGGCAGCCCACTCCACGCACCGAGGAGGCCTTCTGGGCAGCAGCGGCCCTAGGCTTCCTGCTGGTGCTGCTCACACTGTCCGTGCTGCACACCCGTCTGTACCGACACTGGCACCGGGCCCCCAGCCTGTACTGGCCCACTCACGACGACGGCTATGACAGCGTTGCAGAGGTGATCCGCAGGAGGCTGAAGATGggcagcaggaggaagagacGGGTGCCGCAGGGCCGGAGAGAGGAGAGCAGCCAGCTGCTGCCGGCCTCTAGCAGCGAGGAGTTGGACTGAGTGGCATCGGCTGGCAGAGAGGACAGCGATGCCTGCGAGGCAGAGAGGTGGGGCGTGGATTCTGCCAGCCAAAGAGAGGGGCGTCCTGTTGCAGCAGCGCTCTCTAGCCCTGAGCGGAGGGAGTTCAGTGCCTGTCCTGGACACTGGCCTCACACAGGTCTCTCCCACTCTGCAGCAGCCGTCCTGACCCTCCCCTCCCCACACTGCAGACTTACCTTGTAGCCCGAGTGTCCAGGAAGCAGAgacaccttttattttattgttttaattatttttacacgGAAACCCTAAGGAGCTGTAATCCTCCTAGCTAGACACTACGGTACAGCCCCAGAGCTCTTGATTGTGTTGATGCAGATGCTTTGGGCTGGCCAGCTGCATTTAGCAGGTTTTAACAGAACAGTTTCAAAGTGGCGTTCCCCAGATGTGTTCCTGAACGTTCCAATCTAGTTATGTTTTTATACACCATCATTGTCAGTTTAAGAAGTGGTTAAGCTCACTGTAcccatgtatttaaatgacatgCTTTTGCGTTTAGAGGTACCACAGATGTTTTTGAAGTATaattctgtatgtatatgtcgACTGTTTTACAACACTCTTACCCGGTGTGAGTAGGGGAGGGGGGGAACACAGCTTTACTGGGCTCAGATTGCAGGAATGCCATGACTGGGTTTACAGGCCAGAACCTCTTGCTTTGAATCAGGCCAGTCCTGTGAAGCAAATCAGAGACTATTAATCATCACCTCAGTGATGGGTTAAATATGAGAATATCCCTCAGTAATCAGAGAGGCGTGACCATTGTTCATTTGACTGGGAGAGAGGGTTAATGCCTCGCAAAATACATGAGACTGAAGCTTTGCAATTTTTCTCCTACATAAAAACATTGGTGGGTTGGGGCACTTAAGTTCTGCACTGTAATTGATTTGACAGGAGTTACACAAATCTGAGAAATCAATGCACAATcagtctttgtgtttttatatcagGTATGTGTCGgcacagaaacatgttttttaaattacttattaatggggctgttctctctctctctctctctctctacatatatatatatacacacacacactattggTCTACTTTACATGCAGACCCCACAGTTGTGAGAGAGAATGACTTAATTGTTCTTCATTATTAAAAGGATCTTGTATAACAAGCTGGTGTCTTAATCTAATTATTCTTAGATGTTATTCATGGGTATGGCTTGAATGACTGCATGAGGTTCCTGACTATAAACCCAGACTGTCTGAAGTGCAGAGGGGCCAATTTGTCACAGattattaagtgtttttatagACACATGTATTTTTCCACCAGTATAATAAGCAGGAAACTGAATGGAACTGctcaattttatatatatatatatatatataaattgacaAAAAGCTACATTGAAGTGTCCTGCATAGAGCCATTCCTGTGTGGGATCTTACAATATGGGTGTTTGTGTTCAGGAGGTGCTCAAAACTCATCAGAAGGGTCTTCACTTCACAGGGATGCAGTTTTAAAGGGGGCGCCGGGAGAAAGTGAAACTTGCAAGGCAGGATTGGTCTACTGGCCTGTTTCCCAGGGAGCTTTAAGTGTGATCAGCAATTGTCTAGGTTGCTGTCTGCCTGACTGTCTTTTGAAGCTCACTGTTGGCTGATTTTCCCACCTGACTGTGCAAGTCTGAATTGGGGCACCTCCTCCGTGCTTAGATGTACACGTTGGATCTGCTCACCGACTACCCCCTCCCTTCCTGCAGGAATGGTCCATGTGTTCACAGGGCCGGACACTGTCTGGTCTGTTTAATTATAGCACATGATTCTGTGCAGCAACAGAGGAAAAAGCAATCTTTATCACAGTGTCCCTCCAGTTCTCATGAACAATATACACTGCCAGCTGTTGTCAATACTGggaatgtacagtactgtgcaaaaattttaggcaggtgtgaaaacatgctttgaagtgagaatgctttcaaaaatagacatgttaatagattatcaatgaacaaaatgcaatgtgaaTAAACAGacgaaaaatctacatcaaatccatatttggtgtgaccgcccttgccttcaaaacagcatcaattcttctaggtacacttgcacacagtt

Function

GO:

id name namespace
GO:0034708 methyltransferase complex cellular_component

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194271 lncRNA downstream 2026 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 3526 9325522 ~ 9330533 (-) True G154234
TU194169 lncRNA downstream 194233 9128770 ~ 9139826 (-) True G154157
TU194161 lncRNA downstream 225696 9095671 ~ 9108363 (-) True G154150
TU194160 lncRNA downstream 230261 9095671 ~ 9103798 (-) False G154150
TU194274 lncRNA upstream 4025 9343755 ~ 9393333 (-) True G154237
TU194299 lncRNA upstream 96150 9435880 ~ 9437899 (-) True G154260
TU194320 lncRNA upstream 232485 9572215 ~ 9572908 (-) True G154280
TU194453 lncRNA upstream 749824 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 797698 10137428 ~ 10138925 (-) True G154399
AMCG00005777 mRNA downstream 51319 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005779 mRNA downstream 127598 9203915 ~ 9206461 (-) True AMCG00005779
AMCG00005778 mRNA downstream 132766 9194432 ~ 9201293 (-) True AMCG00005778
AMCG00005776 mRNA downstream 141998 9182515 ~ 9192061 (-) True AMCG00005776
AMCG00005747 mRNA downstream 280633 9043131 ~ 9053426 (-) True AMCG00005747
AMCG00005785 mRNA upstream 10704 9350434 ~ 9371422 (-) True AMCG00005785
AMCG00005765 mRNA upstream 99331 9439061 ~ 9463061 (-) True AMCG00005765
AMCG00005766 mRNA upstream 135847 9475577 ~ 9479846 (-) True AMCG00005766
AMCG00005773 mRNA upstream 160298 9500028 ~ 9508536 (-) True AMCG00005773
AMCG00005771 mRNA upstream 181568 9521298 ~ 9535270 (-) True AMCG00005771
TU194148 other downstream 241486 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1209374 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1332719 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1545738 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2837488 6490255 ~ 6496571 (-) True AMCG00005674
TU194289 other upstream 85560 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 975650 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 975650 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1504111 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1566565 10906295 ~ 10910432 (-) False G154677

Expression Profile