RNA id: AMCG00005790


Basic Information

Item Value
RNA id AMCG00005790
length 1600
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00005790
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8862478 ~ 8864223 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGAGTCGGCAGCACTAAGGAGCACAGATGCACCCGACTCACCGACCAGCCTGGCAGAGCTGGCGTATCTAATTGTGCCCCCCGGCCCTGCCCCCACTGGTGCTGTTTCCCAGCCTCCTCCAGTCCCGTCTCTGGGAGCTAGTTCCTTGGTGGGGGGAGGTTCCTGCAGTGAGGGCGAGCTGAGGGGCGCCGGGTCTCTCCCTGGGGTTTCTGGCCGACCCGGCGCTGCGTGGCGAGAGCCCAGCGTGGCGCTGCCTGACAGATCCCGCAGCTCCGCACTGCTGACGGCTCCTAGATGAAGGAAATCAAACCCACTTTTATGATTTTACTAACCTGCAAATAGACGAAGACTCTTTCAGTTAATTAGGAGAGGGTAATTAGCCCGGCCGCGTTGAGCACTACTTACTGCTTCTCTTAGAAAATGATGGTTTGACGCTGCGTTTCCCATTAATATTGAATGCACTGGCTTAGGTAGAATGTGTTGAGACCAAACCTAGACCTGcaggttttttatttgttttataccattttaaatgaaaaataaccttTAATTTCCATTATAGCACAAATGGAAAGAGTTCTAACGTTTAGAGTTCTAACGTTATCTGGTGCTTTGTCGCGCGTGTCCATCGCCGCCAGGAACAGAGCGTTTAATGAAGGATTGTAATAGAATCTAAATATGATGACTGTGGAACAAATGAAGGCCGCGTCCGTGTGTTCGGACGTGGCACCTCCCATCCCTGGATCCAGCCAAGACCATTTCAAGAGCCCGACATTTCCTCATTTTAAATCAGCGTTTTTAAAAGTGGCCTCAATCGTCCACGAACATTTCAGAAAGTCTCTGGTGCAGCTGAGCGAATGCAATATGGGGATATAGCGACCGTGGTGCCGCATAGTCCAGGGGTTCTGGTGCACGGTCATTCGCGGTGCAGCTGCCTCAGTCCCGGTCCCAGGGGTGTGGGTCCTTATCCACTTAAATGCCTGATCACTTTAATTGCATCACAGCTTCGTCTTAATTGGTCCGTTGGGCGGCCTGCTGGGGGGCGATGATGGGATCTATATTAGGGGAAATtactggaaaagagaagctgtgaTCTTTTGgtagatttgtttattttttttgccttctAGATCTTTAAAAACTTGCTTCAGATTCAGATGGATCTAGGAGCAGCTGAATGTTATTTCGGAAcagcactttttgtttttaagaaatgtatattttttagtGTTGGGAAAAAAAGGTTCATATCACTTGCTAaacatgcatttgtgtttgtcagAGTGTAAGATGTGGCATAAAGGCAACACATAACCTTTAACAgtaactataatatatataattaaccaCTGCATCTAAAATCCTGAGCAAATtccactgaaatatatattcttaaagcTTCTGTTCTCTATCCTAgtgaaatatatactttttattatctCTTAGatgtattaaaacatgtttattccaTATTCAATCCATGTTCAATGAAGGAAAAGATCAGAGCATTAATATCGGACTGTGGACAGGTCTTCCTTTCCTGTAATTCTCACTGTATCCTAATAAACAGAACGACTGACTGACAGTGCCATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194041 lncRNA upstream 8625 8853578 ~ 8853853 (+) False AMCG00005787
TU194003 lncRNA upstream 57174 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA upstream 66054 8793827 ~ 8796424 (+) True G154030
TU193916 lncRNA upstream 132323 8729803 ~ 8730155 (+) True G153955
TU193795 lncRNA upstream 510729 8345678 ~ 8351749 (+) True G153859
TU194085 lncRNA downstream 157727 9021950 ~ 9071747 (+) True G154091
TU194149 lncRNA downstream 229686 9093909 ~ 9094670 (+) True G154143
TU194153 lncRNA downstream 236206 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA downstream 236206 9100429 ~ 9108370 (+) False G154147
TU194189 lncRNA downstream 328073 9192296 ~ 9194187 (+) True G154175
AMCG00005791 mRNA upstream 106 8854382 ~ 8862372 (+) True AMCG00005791
AMCG00005787 mRNA upstream 8378 8828578 ~ 8854100 (+) True AMCG00005787
AMCG00005755 mRNA upstream 85606 8772389 ~ 8776872 (+) True AMCG00005755
AMCG00005754 mRNA upstream 100408 8756975 ~ 8762070 (+) True AMCG00005754
AMCG00005757 mRNA upstream 146754 8707225 ~ 8715724 (+) True AMCG00005757
AMCG00005789 mRNA downstream 5686 8869909 ~ 8873125 (+) True AMCG00005789
AMCG00005788 mRNA downstream 12187 8876410 ~ 8883801 (+) True AMCG00005788
AMCG00005742 mRNA downstream 33054 8897277 ~ 8904084 (+) True AMCG00005742
AMCG00005746 mRNA downstream 145961 9010184 ~ 9016738 (+) True AMCG00005746
AMCG00005745 mRNA downstream 171065 9035288 ~ 9039062 (+) True AMCG00005745
TU193852 other upstream 355403 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 631888 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1596507 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2373858 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3640563 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 571677 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 723579 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1017159 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1200937 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 1216212 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile