RNA id: AMCG00005792


Basic Information

Item Value
RNA id AMCG00005792
length 3341
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00005792
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8786806 ~ 8792875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCTGGCATTTACTGGAGATTACCTGGGTTTGGACACGGAGGGGACTGGGAGAGCTCGACTGAACCGGTTCCCTGAGATTATGGGTCCCCGCCTAGTCTGTCTTGGGCTTCTCCTCGGCTGGGTGTCCGCCAACTCCCCTACCCTGGAGCCCAATGGCAGAAACGTCTGTCTGGAGCCGAGGGATCCCACAACCCTAGTCTGCTGCTCTGGGTGGAAACAGGAGGGCAGAGACTGCCCCATCCgcTGCCCGACAGAGTTCTGGGGCCGTGACTGCCGGGAGCGGTGCCCCTGCCACCCGAACGGCCGCTGCGACCCGGAGACGGGCCAGTGCTCCTGTCTGCCGGGCCGCTGGGGGCTACAGTGCCAGCACGCCTGTAAGTGCGGTCGCCACGGACGCTGCGACCCACTGCACGGCAACTGCACCTGCGACCCGGGCTGGTGGTCACCCGCCTGCAACAAGGCCTGCCAGTGCAGCCTCACCAGCTCCACCTGCCAGCCGGCCACCGGGAAGTGCCTGTGCGCCCACGGCTACTGGGGCCAGAAGTGCAGCCTGAACTGCAACTGCTTTATATCGCCCTGCCAGCAGCGCACGGGTGCCTGCCAGTGTCTGAAGAGCTGGTGGGGGCCCACCTGCGACCGCAAGTGCAACTGCAACATGAAACATGCCGACTGCGACGTCAGCACCGGGGACTGCCTGTGCGAGCCTGGCTACAAGAGCCCCGTCTGCAATGAGCCCTGCACCGCTGGCTTCTACGGCGCGGGCTGCAGCCAGAGGTGCGGACGCTGTAAGGAGGGCCAGCCTTGCTCCCCCGTGGACGGCTTCTGCGCGGCGTGTGACCCTGGCTGGAACGGCACCCGCTGTGACCAGCTGTGCCCGGCCGGTACTCACGGAGACCTCTGCCTGGGGGTGTGTCCTCACTGCCGGAACGACGAACCCTGCGACCGGGAGACAGGGGAGTGCGCCGACTGTGACCCGGGCTGGACTGGACCAAGGTGTGACGCCCGCTGTCCAGACGGGATGTTCGGGGACCGCTGCCTCTTTCACTGTGGACCCTGCTCCCACGGGCGCTGTGACCCTGTGACCGGAGTCTGCGTCTGTGAGCTCGGGTTCGAGGGCGAGAGCTGCAACAGCACGTGTCCTGAGCTCTTCTTCGGGGGCAACTGCTCGAACCCCTGCGCCTGCCACGGGGACCCCTGCCACCCGATCACCGGACAGTGCCACTACAGGGTGGCGGGCCGGGGGGCTCTGATCGCTGGCCTGCTGGTGcccctgctcctgctgctgctgggcgtgttgtgctgctgctgctgctgcggagGTAGCCGGACCGACGCCAAGGACAGGGTGGCAGTCGGTGACGGGGGACCAGCTGGCCGGATGAAGCACCACGTCTACAGCGTCCTGGCGAACCTGAGCGCCGCCGTGCCGTGTCTCAGCCTGGGCTCCTCCACGCTGCCCCGGGTCACAGTGTCCCACCACGACCCCGAGGTGACCTTCAACCACAGCTTCATCGAACCGCCGTCCGCGGGGTGGGTGTCCGAGaactccttctcctccttcgAGACAGACGAGGGGGATTCCCTGTACTGCGTCCCTCCCTCGCAAGATATCTCGGCCGTGGCCGGAGGGGAGTTCCAGGAGATCAGCTCCAAATGCAACATCTTCCCCGACGCCTCGGCCTTCAGCAGCGAGGACGTGTCCCTGGCCTTCGGCATCCCGCGCACCTCCAGCATCGCCAAGTCCAAGAGGCCGTCCGTCTCCTTCGCTGAGGGCACCAAGTTCTCGTCGGAGGAGCGGCGCGGCTCGGCCTCTGAGACCCCCAATGCCGCCCGCAAGCCCAAATCCCCCTGGGGGGTCCTCAAGCTCTCCACCATCCAGTCCCAGAGCCCCCCTGGGGAAGGCGAGGTGGAGAGGccggagcaggaggaggagacgCAGCTGGGAAACAACAGCCCCCCGGAGGAGCAGGAGGACGGGCCCGACACGGGGGTCCCGAGCTCCAGTCATCAGGCTTCCGGTCCCATCCAGAGCGTTGGGGGGGAGAAGGGGGGGAGGCGGCGGACCATGTCCAATGCCAAGAGAGGcgcccagcagcagcaggcgaATGCCCAGGCCGGGGGCTCAGGTAGGGTCACCACAGTGTATGTGACGGTGGGCTCGGCCGCCCGCCCCACAGAGCCCAGCGCGGAGGGGCCGGTGCAGGCAGTGCTGCGCAGACTGGGCAGCCTCCAGAGACAGAAGGACGAGGGCGGCCGGCCCAGGGGCAGGGGGGACAGCATCTCCAAGCCGCCGCGCAGGAAGCTCGGGGCGAGGGCTGGCATGTGGGAGCAAGCTGTCGCCACACCCCCCCCGGAGGTGAACCTGAGGAATCCCAGCTGGGGGGAGCAGCAGGATCCCCACGCTGCGGACCCCCGGGACGGCGGGACGCCACGGAGGCCACTGTCCATTCTGAAGAGCGTGCCTGAGGACGTGCAGCAGAGCCTGGCTGGGGACGAGGATGGCCCGTCAGAAGCCGGTTATCTCTCCGTCGGCACGGGCCAAGCCACACAGGGAGAGGGGCAGGTGCTGGAGGAGGGACCCGTATATGAGAATGTGTCTGTAACACAATCATAGATCCATGGACAACAAACAGCAGCTCAGTGGCCTGGCTGGGTGTCTGTCTGGGTAACTGAGCTGGACTTCAACAGGGGAACAAGTGACCGACCCGCAGCACAAACTGCATCGGATCAGAGCCGAGCGGCACCGAGTCGGACCAGTGAGGACTACCACAGGGACTGGAGCTGCTTTGTCCAAAGTCGGATTTGCGGTTTTCATTCTTATGTCAAAAGCCCAGATAAGCCTTCCAGTTGCGCACATTGCTGGGAAGGTGACAACATTGGGGACAGACAATGAGACAAATGGAGAAAGATATCAGGAAGTTCCagtatttgtattctttctgtgtattattaataaatcgCTCCAGAGAAATGTGTCCTTCTTCCTGTGATAGGAGCCCAAAACAAAGCCCAGCAGTGTTGTGGTTAATAAGTGACCAGTTAATGGGGTACAACCCAAGGCTGCATATCTGGCTCCAACTGgcaggagagaggggggtggtgggggggttaccAACAAATTATTTGAGCTTTTAACCCTTTCAGGACAGGAGGTCTGCTGGTGTTTCCAGAAGCTGGTTAAGAGAGGGATTCTGTggatgcagtgcagtgtgtactCCCCGTGACAACCTTGTGTTCAGCTCTGCAGAGCTTCCTGAATTAAAACATGCAAGTGCTATTGGTGATTTATACTGACATGCAtaaaacatgcatacaaataaataaatgacaatctACAA

Function

GO: NA

KEGG:

id description
K24318 SCARF1; scavenger receptor class F member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193982 lncRNA downstream 56657 8729803 ~ 8730149 (-) True G154010
TU193946 lncRNA downstream 198584 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 765166 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 802875 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 911764 7874787 ~ 7875042 (-) True G153742
TU194132 lncRNA upstream 194406 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 302796 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 302796 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 305297 9098172 ~ 9103435 (-) False G154150
TU194169 lncRNA upstream 335895 9128770 ~ 9139826 (-) True G154157
AMCG00005795 mRNA downstream 285 8776856 ~ 8786521 (-) True AMCG00005795
AMCG00005760 mRNA downstream 15938 8764511 ~ 8770868 (-) True AMCG00005760
AMCG00005762 mRNA downstream 22657 8763907 ~ 8764149 (-) True AMCG00005762
AMCG00005759 mRNA downstream 34438 8742312 ~ 8752368 (-) True AMCG00005759
AMCG00005761 mRNA downstream 58714 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005794 mRNA upstream 3435 8796310 ~ 8802157 (-) True AMCG00005794
AMCG00005793 mRNA upstream 12276 8805151 ~ 8818446 (-) True AMCG00005793
AMCG00005796 mRNA upstream 25799 8818674 ~ 8819107 (-) True AMCG00005796
AMCG00005797 mRNA upstream 28668 8821543 ~ 8824036 (-) True AMCG00005797
AMCG00005743 mRNA upstream 93221 8886096 ~ 8895315 (-) True AMCG00005743
TU193709 other downstream 662121 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 785466 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 998485 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2290235 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2703940 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 297547 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 632415 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1522505 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1522505 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2050966 10843841 ~ 10912745 (-) False G154677

Expression Profile