RNA id: AMCG00005795


Basic Information

Item Value
RNA id AMCG00005795
length 2031
RNA type mRNA
GC content 0.61
exon number 16
gene id AMCG00005795
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8776856 ~ 8786521 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCGTACAGATGCCTCAGGACGCACGGCGGACACAGGAGGGGAGGAGTGCAATGTAATTGTGGCAGTCAGgGTGAGGCCCCTGAGTGCGGAGGAGCACAGGCGTGGGGACCAGAGAGTGGTGCACTGCCCCGACCAGCGCACCCTGATGGATGCTTCCTCTAAGTGCATCCCTTGCTTGGGGGAGTCCCCCTGGTTTGACAGCTCCGATCTCGCCCCCCCACCACAGGTGAGCCATGCAGGCCAGGAGAGGAAGTTCACCTTTGATGTTGCCCTGGAGCTGGACAGCCTGCAGGGCCAGGTGTTCAGGGAGTGTGGGCTGAAGAGGCTGATCGACATGGCCATTGAGGGATACTCCAGCACGGTGTTTGCGTTCGGGCAGACGGGCTCTGGTAAGACCTACACCACTACCGGCCCTCATTCTCTGGTCTCGGGAAGAGGGCGTCCCCAGGAGCTCAGTGACATCGGCCTGATGCAGAGATCGCTGTCCTACCTGCTGGACCAGGTGCAGCACAGGGAGGGGGTGGCCCTCAGTGCCTCCTACCTAGAGATATACAATGAACAGGTGCGTGACCTCCTGAACCCCTGCCGGCCGGAGACGCTGGCGGTGCGTGGGAGCAAAACCCGCGGCTTCCATGTGGAGAATCTGTCCAGCGTGGAGATCCACAGCCTGGGCGCGGCCATGGAGATCCTGCAGGGAGgcATGCAGAACAGACAGACCTCATCTCACTCCCAGAACGATCACTCCAGCCGCAGTCACTCCATCTTCACCGTCTACATCGAGAGTGAGACGGCCGAGGCGGAGGGCTGTGCCGGACGGCTGTCCAGACACGGGAAGCTGTGTGTGGTGGACCTGGCGGGCAGCGAGAGGGCGAAGGACACAGGAGAGCTAATGGAGGAGACCGGCAGCATCAACCGCAGCCTCCTCACCCTGGGTAATAGACGGGGCGTCAGTGGCCAGGCTCCGCTACAGTGCACGAGGATTCACTCAGAGTTAACTCGTCCCCTTGTCCACACAGGGAAGTGCATCTCCGCCCTGGTGGACCCAAAAAAGAGGGGAGGTCATATCCCATACCGGGACAGCAAGCTCACCAAGCTGCTCTACGATTCACTGGGAGGATCAGGGGTCACACTAATGATTGCATGTGTGTCTCCCACGGTAGCCAACCTACAGGAGACCATGAACACACTACGGTATGCCAGCAGGGCCAAAAAGATCAAGAACCGACCCATGGCCAAAAGGGATGCTGTGCTGTTCCTCTACAGGCAGGAAAACATTGTGCTGCTCAGCCACCACGAGTCCTccacccagcagagggagctcTTGACGCACGAGATCTCCCGACTACGGCGGAAACTGGACGACCTGGAGAGGTTGATGTCCACCTCTCCCACGGCCAGCAGCAGCCACTCGGGTCACTCCCTGGACACAATGAGCAGTGGCAGCAGTGGCCGCTGCCCCCACCACCACCGACACCTGCCCTCCACCTTCCTGCCAGCACTCGGGCTCTCCAGCCACATGCCTCGACATGCCCCCCACTGGCACAATGGGTCCTTCCCCTTTGTGGCTCAGGAAGACCCCGCCTCTCAGAATCCCCTCCCACTAAGGAGAGGGTTCTTGGTGACGGATCCCCACAGAAAGaTGATTGAGCTGCCCCCTCTGGACGCCTGGTTCCAGGGCCAATCATCCAAACTGTCTCCCGGGAGCGTGGCATCCCTGCAGGATCCTCTCAACCTCCAGCCCAGCGCAGATGAAAGCCAGCTTCAGGGGAAAAAGAGACGGGGGGAGAACAGGGGGCACGCAGACCGCTTTCAGACCATGAAGGATGCCAGAGCCCTTCCACAGACATCCCCGGGCTCGGTGGTACCCACTGCGCCGCCCCTACCAACCCCACCTGGTCCGGTCCCCCCCCGGCAGCCCAAGGGCACAAGGAGGAGAGggaAGTCTACAGGTGACCTGGGAACACTTGACATGCAGCACCTTCGTCACGTGACTAGGGAGAACCTGCACTGTGGCAACATCCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193982 lncRNA downstream 46707 8729803 ~ 8730149 (-) True G154010
TU193946 lncRNA downstream 188634 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 755216 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 792925 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 901814 7874787 ~ 7875042 (-) True G153742
TU194132 lncRNA upstream 200760 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 309150 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 309150 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 311651 9098172 ~ 9103435 (-) False G154150
TU194169 lncRNA upstream 342249 9128770 ~ 9139826 (-) True G154157
AMCG00005760 mRNA downstream 5988 8764511 ~ 8770868 (-) True AMCG00005760
AMCG00005762 mRNA downstream 12707 8763907 ~ 8764149 (-) True AMCG00005762
AMCG00005759 mRNA downstream 24488 8742312 ~ 8752368 (-) True AMCG00005759
AMCG00005761 mRNA downstream 48764 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005758 mRNA downstream 85125 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005792 mRNA upstream 285 8786806 ~ 8792875 (-) True AMCG00005792
AMCG00005794 mRNA upstream 9789 8796310 ~ 8802157 (-) True AMCG00005794
AMCG00005793 mRNA upstream 18630 8805151 ~ 8818446 (-) True AMCG00005793
AMCG00005796 mRNA upstream 32153 8818674 ~ 8819107 (-) True AMCG00005796
AMCG00005797 mRNA upstream 35022 8821543 ~ 8824036 (-) True AMCG00005797
TU193709 other downstream 652171 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 775516 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 988535 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2280285 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2693990 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 303901 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 638769 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1528859 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1528859 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2057320 10843841 ~ 10912745 (-) False G154677

Expression Profile