RNA id: AMCG00005796


Basic Information

Item Value
RNA id AMCG00005796
length 270
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00005796
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8818674 ~ 8819107 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCTGCCTTCCCATACCGAGGGGTGCCAGGGGGGATCCCCACCCCAGGCCAGATCCCTGACTTCATGTCCGAGGAGAAGCTGCAGGAGAAAGCCCGTAAGTGGCAGCAGCTGCAGGCGAAGCGCTATGCGGAGAAGAGGAAGTTCGGCTTCGTGGATGCCCAGAAGGAGGACATGCCACCCGAGCACGTCCGCAAGATCATCAGAGACCACGGCGACATGACCAACAGGAAGTTCCGTCACGACAAGAGGGTCTATCTGGGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193982 lncRNA downstream 88525 8729803 ~ 8730149 (-) True G154010
TU193946 lncRNA downstream 230452 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 797034 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 834743 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 943632 7874787 ~ 7875042 (-) True G153742
TU194132 lncRNA upstream 168174 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 276564 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 276564 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 279065 9098172 ~ 9103435 (-) False G154150
TU194169 lncRNA upstream 309663 9128770 ~ 9139826 (-) True G154157
AMCG00005793 mRNA downstream 228 8805151 ~ 8818446 (-) True AMCG00005793
AMCG00005794 mRNA downstream 16517 8796310 ~ 8802157 (-) True AMCG00005794
AMCG00005792 mRNA downstream 25799 8786806 ~ 8792875 (-) True AMCG00005792
AMCG00005795 mRNA downstream 32153 8776856 ~ 8786521 (-) True AMCG00005795
AMCG00005760 mRNA downstream 47806 8764511 ~ 8770868 (-) True AMCG00005760
AMCG00005797 mRNA upstream 2436 8821543 ~ 8824036 (-) True AMCG00005797
AMCG00005743 mRNA upstream 66989 8886096 ~ 8895315 (-) True AMCG00005743
AMCG00005744 mRNA upstream 87304 8906411 ~ 8933458 (-) True AMCG00005744
AMCG00005748 mRNA upstream 208022 9027129 ~ 9030678 (-) True AMCG00005748
AMCG00005747 mRNA upstream 224024 9043131 ~ 9053426 (-) True AMCG00005747
TU193709 other downstream 693989 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 817334 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1030353 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2322103 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2735808 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 271315 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 606183 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1496273 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1496273 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2024734 10843841 ~ 10912745 (-) False G154677

Expression Profile