RNA id: AMCG00005801


Basic Information

Item Value
RNA id AMCG00005801
length 1541
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00005801
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10069124 ~ 10081209 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCCGATCTCGAAAATCCACCACTCGAAGCACGTCATGAGGGTGCTGGGAATGGCCAGCTGCATGAAGGCCCCCCACTCCTGCAGGGATGCTGTAGACCAGCCTGGGTGTGGCAGGCTTTTGGTTAAAATGAATCAGATCTGTGTGGCACTTCTCAGTCTTCTCTACTTCACCTCCGAATTGAGAGCTGTGCAGGTGTCTGTGCACCCAGCGGTGTCTGGCGGTGTGATCTCGGCACAGAGGgaggacacactgacactgacctgCGAGGCCGTGGAGCGCGAGGGGGACGAGGAGCTGGACTGGTACCGGGAGACGCAGCGGATCTCTCTAGGGCCAGAGAACAGGGTCAACACCAGCAGCCTGTGTGTGTCCCCAGTCTCCAAGGCCGACAATCGCGTCACCTTCACCTGCCAGCTCAGACGGGAGGCCAGCGTCAATGCCTCCATCCAACTGGACGTGCACTTCCCCCCAGAGCTGTCTGGCACAGAGCTAGTGACAATGGCGCAAAACCAACAGGTAACGTTCACCTGTGATGTCCACGCCAACCCTCCGGTGTCCGTCTCCTGGATGAAGAACAATGAACGCCTCAATCTAGACACAGGCGGCTACACTCTGTACCAGGATGGCAGGGAGGCCACACTTTCCATCAACAAAATCCAAAAGTCCCATGAGGGCAACTACAGCTGTGTCACAGACTCCCCAGAGTACGGGCAGAGAACCAAATCCTTTACCCTCACAGTGGAAGGTGAGTGGACGCGTTTCCCGTACGAGCCGGTGATTGCCGGGGGGGTGATAGTGCTGTGCACAATGATCCTGGCTGTCATCTCCAGGAAGGAGAAGATTGCCAAGTGCTTCAAGTAAGATGAACTCGTCTCCCAAAAACCTTTGGCCTGCAGTGCCAATGCATTCTGTCTGAGGATTGCCATCGAGGACCCCTCTGAACGGCTGTAATATGAACATCCTGCACCGATTGTTTTTTACACTGCTGATATTAACGTCAAaataatggattttatttttcacatgcaCTAGCTTCTTCTGAAGAcaaggaaagaacaaaacagtGATGTCTGACTACTTTAAATCACCCGTAACTCTCTTAGACACGGCtccattaaacatttatatatgtttaggcttttgtattatttgttgaaatgtgtgtttaatgatTCATAAAACATATGCCTCGTGACATCCACACAAACATCAAAGGAAGAAATGCCTGGCTATAGATGCTTTTAACATACCTTTTTTTTAAGCACTAAAAGCAAATAACCTTGCGTGGGAGTTTAATAAGTCCATATCTCCTTCTCAGAGGTAGTACTCTTCACGGAAGTGtatatttgaaagtgcaaaagAATGGAGAAGATGTCTTTAAGTGTCATGACTATAAATCTTAAATTATTGCTAATAAAGTTATCCAAGCCTTGTTgacatttctcattaaaacCACGTGGTAACTAAATTAATGAGTAGGTTCAGCACATGTGAAATCAGCCTGCATTAGTTATCAGTGCTGTGGATTGCTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194320 lncRNA downstream 496216 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 631225 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 675791 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 737091 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 738591 9325522 ~ 9330533 (-) True G154234
TU194453 lncRNA upstream 8345 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 56219 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 63274 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 462325 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 494761 10575970 ~ 10576502 (-) True G154575
AMCG00005800 mRNA downstream 3674 10058921 ~ 10065450 (-) True AMCG00005800
AMCG00005809 mRNA downstream 122428 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005810 mRNA downstream 162812 9891658 ~ 9906312 (-) True AMCG00005810
AMCG00005811 mRNA downstream 178541 9870078 ~ 9890583 (-) True AMCG00005811
AMCG00005769 mRNA downstream 208200 9838157 ~ 9860924 (-) True AMCG00005769
AMCG00005933 mRNA upstream 14935 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005931 mRNA upstream 26048 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005930 mRNA upstream 106403 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005932 mRNA upstream 148659 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005850 mRNA upstream 214390 10295599 ~ 10344002 (-) True AMCG00005850
TU194289 other downstream 634184 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 976551 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1944439 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 2067784 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2280803 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 234171 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 234171 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 762632 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 825086 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 829307 10910516 ~ 10912745 (-) True G154677

Expression Profile