RNA id: TU194427


Basic Information

Item Value
RNA id TU194427
length 441
RNA type TUCP
GC content 0.66
exon number 2
gene id AMCG00005802
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10065160 ~ 10089769 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCGGGCGCTGCGGGTGAGTCTGCGCACTGCGCCGCTCTGCTGCCGGGCCTCCAGCGCCTCCCAGCTCGGGGTGTCGCTGACGTTGGTCTGCACGGCCTTGAGCGGCAGGCGCTTGCGCAGGGACATGCGCAGAGAGTTGAGCGACGTGGAGGCGCGCAGCTTGCGGAAGCGGTCGGGCCGGGGAGCCGGGCTGTCCCCCTCGTCCGACTCGTCCAGGACCCGGTGCGTCCGCCAGCCCGCCCCGTGCAGCGCGGACGACATGACTCGCGGGGTGGAGGAAATGGATGAGAGAACCGATTCTCCAGCAATCCGAGAGACACCTGCAGAGGACCCCAGCCCGAGTTCCAAGCTCTTCTGCTGTGCCTGTCTGAGACGATGGATCCCACTGGTTTACAGAGAAGAGCTTTATGAAGTCCTGCGCTTAACTGGGCCTTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194391 lncRNA upstream 121017 9905772 ~ 9944143 (+) True G154343
TU194291 lncRNA upstream 623779 9440493 ~ 9441381 (+) True G154252
TU194189 lncRNA upstream 870973 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 956790 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 956790 9100429 ~ 9108370 (+) False G154147
TU194448 lncRNA downstream 1805 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 190771 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 209012 10285514 ~ 10332094 (+) False G154447
TU194535 lncRNA downstream 226455 10302957 ~ 10303497 (+) True G154451
TU194536 lncRNA downstream 227716 10304218 ~ 10304909 (+) False AMCG00005851
AMCG00005798 mRNA upstream 12351 10043818 ~ 10052809 (+) True AMCG00005798
AMCG00005799 mRNA upstream 32338 10020967 ~ 10032822 (+) True AMCG00005799
AMCG00005806 mRNA upstream 97013 9946752 ~ 9968147 (+) True AMCG00005806
AMCG00005807 mRNA upstream 121836 9941462 ~ 9943324 (+) True AMCG00005807
AMCG00005808 mRNA upstream 144090 9907846 ~ 9921070 (+) True AMCG00005808
AMCG00005934 mRNA downstream 55626 10132128 ~ 10136716 (+) True AMCG00005934
AMCG00005928 mRNA downstream 130818 10207320 ~ 10218325 (+) True AMCG00005928
AMCG00005927 mRNA downstream 184147 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005929 mRNA downstream 190771 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005851 mRNA downstream 221387 10297889 ~ 10304837 (+) True AMCG00005851
TU194377 other upstream 181205 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 475362 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 626891 9435900 ~ 9438269 (+) True G154251
TU193852 other upstream 1558085 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1834570 8215890 ~ 8230590 (+) False G153815
TU194450 other downstream 3933 10080435 ~ 10087692 (+) False AMCG00005802
TU194579 other downstream 386035 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 394041 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 436002 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 645830 10722332 ~ 10730209 (+) False AMCG00005834

Expression Profile