RNA id: AMCG00005805


Basic Information

Item Value
RNA id AMCG00005805
length 3262
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00005805
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10659811 ~ 10665255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagagagagagagagagagacgtggCTGGCTGTTCTGTAACGAAACCAGGGACGACTGTTGTATGAGGAAGTTTGTGTAATCTGGCTCCACATCTCAACGTGATTTCTCTGTGTTTCATGATCAGGCCGGACGGGATGGCGGTCCGAGTGAGCTGACCCAGACCGGCCAAGATCCCATGCGAGGTCCATGTCTGCTGGACGGGGTTTCCAACTGTAATTATTGacgtttatttattgattcgtcttctgggggaggggggaccCTCACCCAGGGAAGGTGGACTCGAGAAAGAAAACCTCCTGCATCAGCTCACACTAATGAAATCGACTTCTTGGATCTTTACGCATTTTGGATTTAGTATTTTGGAAAAAGGACAATAAAACGTTCAAGAGGACTAACAGCAACAACCATAACAACAAGAACGACAACAGCCATCCCGCAGTTGGACAGGTTTACATCCACCCGTGTGCCAGTGGGAGCACGTCCACTGCCCACACAGACACCATTGCAACATCTCTGTCTAGTATATCGACACGATGAGCTGCAATGCGCCGCAGCGGGAGCACAGCCCGAGACAAGACATAAAGACATAACCACCACACGGCGTCAAgtctggagggagagggaggacgGCGTGACCTTTGCTTATGAAAACACTAGCGCTGTCATTGTCCTTCTCACCCGGACCGGGCCGCCATGGAGGGCTGCTGCCTGTGGCTGCCCCGGGCCTGTGAGTGCTGCCTGTCGGAGGATGAGAGGATGGGCCTCGCCGTGGACCGGGAGATCCGGAGCATCCTGCGGGCGcagaagaggagggagaggcgGGAGATCaaggtcctgctgctggGCACGGGCGAGAGCGGGAAGAGTACCTTCATCAAGCAGATGCGGATCATCCACGGCTCTGGCTACACGGATGAGGAGCGCCGGGCCTTCGTACCGCTGATCTACCAGAACATCTTCACCGCCATGCAGGCCATGCTGGGCGCAATGGCAATGCTCAGGATCCCCTACGGGCAGCCCGAGAACGAGGTGTACGCTCAGTGTCTGATGCAGGTGAAGATCCTGCAGATGAAGACCCTGGAGCCACGCTATGCCGAGGCCATCAGTCGCCTGTGGGCCGACCCGGGGATCCGCTCCTGCTACCAGCGCCGCAGGGAGTACCAGCTACTGGACTCCACTGACTACActgggaggagggggaggaggaggcggaaGAGGGACATAGAAAGACTGTCTCTTAGGCTGCTAGGGATTGTGGACGTGGGGGGTCAGAAGTCCGAGCGCAGGAAGTGGATCCACTGCTTCCAGGACGTCACGTCTCTGATCTTCCTGGTGTCGCTCAGCGAGTACGACCAGGTGCTGGAGGAACAAGCCAGCGATAACCGCATGGAGGAGAGCAAGGCCCTGTTCTACACCACCATCCACTCCCCCTGGTTCGTCAATTCCTCCGTCATCCTCTTCCTCAACAAGAAGGACATCCTAGCTGAGAAGATCCTCACCTCTCACCTGGCCACCTACTTCCCCAAGTTCAAAGgtaaGAAGAGGGACGCTGAGGCGGCGATGGCGTTCATCAAGGACATGTTCGTGGAGCAGGCCATCTGCAAAGCGGGTAAGAAGTCCGAGAAGAAGACGCTGTACTACCACTTCACCTGCGCCACCGACACGCACAACATCCGCAAGGTCTTCAGCGACGTCAAGGACACCGTGCTCATCAAGTCCCTGCAGGAGTACTACCTTCTGTGACTGCCCTGCCCTCCTGCCACCCCATCTCTCCATTCCCCACCCCCGTCCCTGCTTCTCTACCGACAATCCCCCCCAAAAACCCACACACTGACTTTATATTGCTGTTTTCATTCACATCCGCTCCGTTTTGGAAGTCCACAGCTCCACGGatgagtgtgtgtattgatCTTGGGTTtcatttgttggtttgtttgtgcaGCCGCCACAAACCACCGATTCCCTGGGGTTCAGGCCGGACTCTTGCTGGGAGAGGTTTCTGATTCAGGAAcgacaacaaaactaaaaaaacgaAAGCGAAAAAATGTTGTGCTTTGATACTTTCCTTATTTTTCATGTCTTCAGTACAAACTAAACcgaataaatacatcaaataaataacccAGGGCTCATTAAACACAGTTGAAGCATGCGGCAGCGACTGTGTCAGAGGAGGAGAACGCGCATCTGCTCAGATCTTCCCATTAACACGGCGCTCAGGAGACTCAGTCGTCTCGGACCTGCTGTGGGGACGTCTCCCTCCGTCAACACTGTCCCTGGCTCTTCCGCTGCTCTCCTGAATAAATACCCACCTCGTCGTATGAAAGAGACAAGTCGaagaacattacattaaattattacattcgTTTTCCTCAATTTAAGGGGGAAAATggattttcatttgtttgttccaTTGCTCAGAATGGTTTGAGGACACGGGGGTCCAGTTCACCAGTGTGGCGGGTCTGTAAAATGGCACAAGGGCATCCTCTCGCTCTCACAGATGGTCTGTTGTGACTCTCTCTATAGTGTGGGGGGGGTTCACAGAAGGCAGGGAAGGATTGTGTCATCTCTCTCCCACTCAGCGAGCACCCGTGGGAGCCCCTCGCCCGTCACGCTCCTCGGGGCTGTGTGATTAAGCAGAGGGACCCGCCGAGACAACAGGGCCATTTTGTCTCCTGAAATtgcctccctctgtctctcccgtTCATCACCAGAATTGAAGGGAGAAGAAAATTGACAATTTGTGCTTCACTTAATTAGAAagctgtgtgtgcgtgagagagagagagagagagagagagagagaaagagagagagtgtgtgttctTTTGCACATAAACCTCTTCTATCCGCAATTCAGGAAAAATGTAAGCAGTTGATCTCCTCGCTGTGTGTTGTCATGTCCAACACACCTCTGAGCAACAACAACGCAACgtaacacaacacaatatcAAGCTGGAACGCACCGAGAGGGGTCGGTTCAGTTGTGGCGGAGTGGGCTCAATTAAGATCAAATATAAATGCTTGCCCAACAAAAACCAAGATTTtgtgttcgtttgtttgtttaagaatgtatttatgtttttatttacttcttaTAGGGCTGTTTTTCTGTGATTCATTGCACATTTTTGCATTCTGCATGAATTCTGTATTCATGCATTAATGGATTCTCTTTGTTGGCTGACATTTAAGCGGATTGATTTCTCTACACTGgcatgtgtgtatctgtgtgtgtgtgtgcgtc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0019001 guanyl nucleotide binding molecular_function

KEGG:

id description
K04637 GNA15; guanine nucleotide-binding protein subunit alpha-15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194688 lncRNA downstream 83309 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 114208 10543534 ~ 10545603 (-) True AMCG00005862
TU194465 lncRNA downstream 514880 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 520886 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 568195 10089554 ~ 10091616 (-) True G154391
TU194763 lncRNA upstream 24893 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 73289 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 137309 10802564 ~ 10818716 (-) True G154675
TU194827 lncRNA upstream 184363 10849618 ~ 10856409 (-) False AMCG00005831
TU194813 lncRNA upstream 245261 10910516 ~ 10912745 (-) False G154677
AMCG00005863 mRNA downstream 102056 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005862 mRNA downstream 108456 10545392 ~ 10551355 (-) False AMCG00005862
AMCG00005859 mRNA downstream 119765 10526146 ~ 10540046 (-) True AMCG00005859
AMCG00005861 mRNA downstream 140193 10508657 ~ 10519618 (-) True AMCG00005861
AMCG00005860 mRNA downstream 157129 10489878 ~ 10502682 (-) True AMCG00005860
AMCG00005839 mRNA upstream 74405 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005838 mRNA upstream 103536 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005828 mRNA upstream 123299 10788554 ~ 10806283 (-) True AMCG00005828
AMCG00005830 mRNA upstream 153615 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005829 mRNA upstream 164735 10829990 ~ 10837970 (-) True AMCG00005829
TU194621 other downstream 307029 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 308092 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1224871 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1567238 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2535126 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 178586 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 241040 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 245261 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 655482 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 671519 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile