RNA id: AMCG00005810


Basic Information

Item Value
RNA id AMCG00005810
length 9171
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00005810
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9891658 ~ 9906312 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAACCTAACCTACGCCAGCGCTTACAGGATGAGCGCCAAAAGCAAATTACCAAACTCGAATCATCCTTTCTGAGCCCTTTAACTACCCTGTACACCCATGGAGGCTTGAAGCTCCCTGCAGTACCTTGTGGAGGGGTGAGGGAGGAGGCAGACGTGGTCTCTGGTGTTGGGTCAGCGGGAGGCAGCATGGAGTGGCTGATCGGGGCCGTGGAGAGGGACCTGGGCATTGACCGCCGGCAGCTGACGCCTGGGCAGAGGCCGCAGGAGTTGGTAGCCTACGTCCCCACAAGATGGCTTTCAgggctgagagagaggaggccGCCCCGCTGCCCGCGGCCCGATGGGCTGAGCGAGGTGGAGGTGCGCACACTACTGCAGAGGTCTCTCAACAAGCTGCCAGCGGGCTGGACACGGGTGTGCATCCAGGGGCTGAGGAAGAGCAGGCTGGGCTACCACCTGGCCACGGAGCCAGGCTGCCAGGGACAAGGCTACTCCGAGGACTCCTTCCTCCGGCTCATGCAAGGAGTGTCCGAACGCAACTTCAGGAACCTGTGGCGGAAGGCTTACCGGGCCTACGTGCAGCCGTACGCAGGAAGAGCGGAGCAGACCCAGATTCTGGCTATGGACGCCCTGCGGCTGGCTCTGCAGGCAGTTTTCTGTTGCCCCATCGTTTCCACTGAGCGCAattccccatctctctccccagccagagaaaaggagaaggaTGGTCCTCTTCCTCCGAGTTTCGCCTCGAAATCCGGAGATGGGCTTTGCCCCAACGTGCTGCCCGTAGAGTGCCTGTTGGAGTCCTCTGACGTGCTTTATGTGGTGCAGCCCTACACACAGTATTCCCTGCATGACATCGTGACCTACAGCCCTGCCAAGCTAGCAAACAGCAATGCCAAGGTGCTGTTCATTCTGTACCAGCTCCTGCAGGCCATGAAAGCCTTCCAGGGCGCGGGGCTGGCGTGCGGGGGACTCTCTCTGCAGGACGTGGCTGTGGACGAGCAGCTCTGTAGCCGCCTGAAAGTCAGCCTGGCACACTACGAGCACTATGGGGCCCAGCAGGCGAGGGAGGCCGGTGTCCAGAACGGTCCCCAGAGCTACACCCGGCGCGAGTCAGACCAACGGCAGTGCCAGGACTGCCGTGAGAAGCTGAAGCAGCTGCTGACAGACTGGGTCCATGGGCAGGTCAGCAACTTCGAGTACCTTATGGAGCTGAACCGGCTGGCAGGCCGCAGGGAGGGGGATCCCAACTACCACCCTGTACTGCCCTGGGTGGTGGActtcactgtgccatttggGAAGTTCCGGGACCTCCGGAGGTCCAAGTTCCGGCTGAACAAAGGAGACAAGCAGCTGGATTTCACCTATGAGATGACCAAGGAGGCCCTGGCAACAGCGGCTTCCAGTGGCGGCGCAGGGGGCAGTCTTACTGGGGGGCTTGTGAGTGGCGTTGGCCCCAGTGGCTCAGGGCAGGCAGAGCACCTCCACGTTCCCCATCACATTTCTGACGTTCTCTCTGACATCACCTACTACGTGTACAAAGCCAGGAGGACCCCGAAATCTGTGCTGTGTAGCCATGTGCGCTCCCAGTGGGAACCCAACGAGTATCCTGCCAGCATGGAGCGCATGCAGAGCTGGACCCCGGATGAATGCATCCCAGAGTTCTACACCGATCCAACCATCTTCAAATCCATCCACTTGGACATGCCAGATCTGGACGTGCCGCCCTGGTGCAGTTCCTGCAGGGAGTTCATCGAAGTCCACCGGCGCCTGCTGGAGAGCCGTGAGGTTTCCCAGCAGCTGCACCACTGGATCGACCTCACCTTCGGGTACAAGCTCTCTGGCAAGGAAGCTGTCAAGGCCAAAAACGTGTGTCTACACTTGGTAGACAATCATACTCACCTGGCCAGCTATGGGGTGGTGCAGCTCTTTGACCAGCCTCATCCGCCCAGGCTGGCTCCCTACCTGTATGCCCCGCCTGAGCCACCTCCCCTGGGCTCAGCGATGATCTACATCTCTTCTTGGATGAACGCTGTTGGACCGACTGCAGCTCAGGTTGCAGACAGTCTCGATGGAATGGTCCTGGAGACGACGGGCTGTGAGACCAGCAGCTGGACATTAGTGGATAAGGACGAGGAGCTTGAGCAAGGGATGGAGGCTCTGGACTCTCTAGGAGCTGCCTCAGGCCCCGTGTCCGCTTCCTCCTCATCAGCTCTGGCTGGGACTGCTGGCGGAAAACCAGCCGGGTCTGTGGAGCCGCTACCTCCAGCCACGGTGCCATCCCAATCTATGGTCTTCCCAACTGACACCACTATCTCCTCTACAGCTGCTGCAGTACCTGGTGTCCGCAATGCCATCATACATAGGAGCAGCAGTTTGGGCAAAAGGCAGGCTGAAGGGAGTGGTGCAGCGGGCCCGGGCACTGAGGACTTTAAGATCAGCCTGCCAGAAGGGTTCAGCCCTCTGCAGCCAttggaggagctggagaagctGAATAATTTCCTGGTGAGGGGCCTCCATGGCAAGGCGCTGGACGGCAGTGCATCCCAGGTGGAGGCAGAAGACGACGCTGTGGGCTGTACTGCATCTCCTTCCCTGCCGGAACTCTTCCAGAGGGACATGCAGGCCCTGGGGGTCCTGATCGCAGAGATATTCTACGCCCCCAAGCTGCGCTGCATTAAACCAGGTGCCTCTCTGAGGGACCGCTACCAGGCTGTCATGAAGCTGTGCTCGGGGAACCTGCGGGACGTCCCCTTGACATTGCACCAAGCGCTGGAGACCCTCCTGCAGCTCCGGTGCGACCGCACTTCACCATCTGGGAAAGAGGCCAATGTGACTACACACAGGCATCTCGTGCTTTTCAAGTATGAGCCCGTTGCCAAGGGTCTCCCCCCTCCCGACCCCTGGCAGTTCCTCAGCCCTTATTCCTCCCCGCTGCCCTTCCCAGCATATTTCCCTGCACTGCACCGCTTCATCTTCTCCTACCATTCCAGGATGGAGGCGGAGCCTGGGGAGAGTTCCCAAGGCCGGGATATTGTCTTCCACCTGTGGCGTCAGCTGGAAACGCTCTTGCAGGGAAAGATCACCCCTGAGGGTCTGGAAATCCTGCTGCCGTTCGTTCTGGCACTCATGTCCGACGAGTCCACAGCGGTCTATGCTGCCTGGTACCTGTTTGAGCCCATTGCGCGGGCTTTAGGGCCACGAAATACTGCCAAGTACCTGCTGAAGCCTTTAGTCGGGGTCTACGAGAGCCCCCGCTGCCTGCGAGGACGGTTCTACCTCTACACCGACTGTTTCGTCCTGCAGTTGATCATGCGTCTCGGACTGCAGACGTTCCTCTCCAGTTTGCTGGCTCACGTGCTCCAGATCATGACCGGGTTTGAGAGCTGCAGTAGCAGCAGCGGTGCAGGATCAGGGCCGGAATGGGAGAACCGTAAGGCCCTGAGCCGGTCTGGGGacctggaggaagaggaggagttCGATGGTGGGGAAGGCGGACCAGCAGCAGGGTCCATTGGTGGGAAGGCAGGCGGCAGTGGTGGCGGTGGTGGTGTGGGCGTTGGAAGCGTGGAGGCTGGGCTGGTGGACTACTCCTCCGGGATCAGCCTCAACGACCAGGTGTTTCTATCGGAAGGGGAGGATTTCCAGAACGGCCTCTACGTCAACAATGGCTCAGGAGGGGCTGGAGCAGGTGGGCTTGCTGGAAAGCAGCAGAGCCAGAACGACCAGGAGTCCCTCAGCCTGGGGAAGCTGAGTGACAAAAGCAGCGCCAGCGAGGTGTCGATCGGGGACGGCGACTTCGGGAAGGACCGGACCAGCCTGAAGTCTGCCGACAGCAGCCAGGATCTGAAGCAGGCCAGCGAGGGAGAGGAAGACGTGAGGGATGGAGGCGAGGTGGACGAGGAGGAGAGCGAGAGTGCGGGAGGTGGTCTCTGTCTCACTCGGTCTGCCTGCGCGGACGAGTCGCGGGAAGGAGAGAACGGGGAAGGCCTGGAACTgggagagcaggaggaagaggaggaggaggaggaggagcaggagcaggagcatGACCTCTTGGAGGATTCTGATGAGAAGGAGCACAAAATACTGCTAGACACAGTGTGTAAGACAGTCAGGTGGCTGTCTGCAAAGCTGGGGCCCACAGTCACGTCAAGATACGTGGCCAGAAACCTCCTGCGTCTGCTCACGACCTGCTACGTTGGTCCAGATAAGCACCAGTTCATGGTGTCGGCCGTAGAGGAGGGCGGCCTGGAAACCGTGGGCAATGTCTATGAGAAGCGGCCTGTAGTGGGGGACCAGACGGCTGGACCCGTCCTCGACTGCCTCATGTACATCGCTCACCTGTATGGAGAGCCTGTACTCACCTACCAGTACATGCCCTACATCGGATACCTGGTGTCTCCACCCTCGTCCTGTCGCCTGAATACCCGCAAGGAGGCGGGACTGTTGGCGGCAGTGGTTCTGACCCAGAAGATCATTGTGTACCTGTCCGACACAACGCTCATGGACATGCTGATGAAGATCAGTCAGGACTTGCTGCTGCCCCTGCTGGAGCTGCTCACCTCCCCCAGGATGGGGTTCCCCAGTGGCGTGCAGACACGCTCGGCCCTCTGCCTGAAGACGCTCAGCCTGATGGCCCTGATCTGCCTGCGCATTGGCCGCGAGATGGTGCAGCAGCACATGGCGGACACCCTGCACAGGTTCTTCCAGGTCTTCTCCCTGCTGCATTGCCTGCAGGCACAGATGGAGACGGCCACGCGGAGGGAGGTTGGAGACTCCATCCTGCTTGACCTTTGCACCCTAGATGGGTCAAACATCACATGTGAGCTATCCGTGTTGGAGGAGCTGCAGGCCGTGTTCAACCCTGAAATGGCCTATGCCTCCTACATCCCTTTCTACTGCCTTATCGGTGACACAGCAATGCGCAAGGTAATCCCCAATCACGAGCTGGTGTGGCGCCTGACTATCTCCTACCAGGAGCGCGTGAGCCCTGAGACAGCGGAGCCACCGGCCGTGCACAGGGGGGATTTGCTCACCTCTTCCGTAGTCTTCTCCCACGCCCCTGGCAATGGCCACAGCCCCTTCCCCGCACCTTCTTCCTCCTTCAATGGAGATCCCATCCCAGAGTCGGGCACCTTCGGCAGCGTGCTGGTGGGGAACAGAATCCAGGTTGCGCGGGATGTAGACCCTGGCGTTGGCAGCGGCGGCGCCATCATGAGTAGAGCTGACAGCTGGGGCCGCCAGAACTCCGCCCACTCCCAGACATGCCCCGCCTCCACCTCCTGGGCTGTTGGCCATGCCCCCGAGGACAGCGCCCTGAAGCAGGAACTGCCCCGCAGTGGCCGGTCCCTCTCGGGAAACTGGCTGGCCTACTGGCAGTATGAGATTGGGTTGAACCAGCAGGACCCCCACTTCTACTTCCACCAGATCCGGCTGCAGAGCTTCCTGGGCCACAGCGGCACAGCCAAGTGTCTGGCGCCGCTCACCGGGGAGGACTTCTTCCTGTCGGGCAGCAAGGACAAGACGGTGCGGCTCTGGCCTCTCTATAACCAGGGTGACGGGACGCAAGATATCGAGCCGCGGCTCACCTACGCCGAGCACAGGAAGTCGGTGTTCTACGTGGGCCAGCTGGAGGCGCTGCAGGAGGTGGTGAGCTGTGACGGGACTGTGCACCTCTGGGACCAGTTCACCGGAAAGCAGATCCGCACCTACGAGGCCTTCGACAGCAAGAACCCGATCACTGCGGTGACCACGATGCCCGCGCCGCACTACAGTGTGGGGTTTGGCAGCGCTGACTCCGTCCTGAGGTTCATCGACCCGCGCAAGCCGGGCCTGCAGCACGAGTTCCGCCTGGCCTACAATAACATCAGCGCCGGCCTGATCCGCTACCTGACAGTCAGCCCGAACGGCCGGACCATAGCGGCCGGGTTCTCCTCGGGCTTCATCGTCCTGCTGGACGCTCGGACCGGACTGATCCTCCGTGGCTGGCCGGCACACGAGGGCGACATCCTGCAGATGAAGgCTGCTGACGGCAACCTGGTGATCAGCTCCTCCACGGACCACACCCTGACGGTTtggaaggagctggagcagaagCCGCTGCACCAGTACAAGTCCACCTCGGACCCCATCCACGCCTTCGACCTCTACGGTCCTGAGATCGTGGCCGGCAGCGTCGCCAACAAGATTGGTGTCTACTCCATGATGGACGTGTCCGCCAGCCCTGTCAGCACCACCAAGCTCAGCTCGGAGAACTTCCGCGGGACTCTGACCAGTCTGGCTGTGCTGCCCACCaagaggctgctgctgctgggctcGGAGAACGGAGCCATCCGCCTGCTGGCCTGAGAGCCGGGCCTTGAAGTCCAGGCAGGTCCAGAAGCCACCAGATGGAAGGGTTCCTTGCCCTGCCCATCGTGGTCTGTATGGAGGACCAGTAGGCTTCACGAAGGCTGGTAGCTTTGCATTGCTGAGGTgttattaatcacattttattagGAGCTGCTGGAGTTGGACAGCAGGATGTTGCTTCTGTTAGACTCTGCCGTGCCGATTGTTCGGCTGTCTGGGAGCCATCGGTGCTCTGCTGTCTTTGACTTAAATAGCCAAAGTGTTCAGGCTCGACGAGACGAGCCAGCCAGAAAACTGACAGCGAGCAGGACATGACATTCGACAAAAGCTCCTgcaatgtctgtatttatttccttcctGTGCAGGAGATGTAGCTTTTAGGGACTGCAGATTCCATGACTACTTTTGCTATCATCGATGATACTTTAATGATAGAGGACGTGAGAGTAGCCGACAAAGGCTCTTCTGGAGACGGCTCTTATTTTGTATCTTCCAACTTGCAGTAGCAATTTGTTACCTGGGCCTAAACTTTGGAGAGATCTGACCTGATCTGGTTTGCTTGCCCTCCTGTGCAGAATGGGTCAGGAGGCAGATGCAGGCCTACTTCACAGCTGCAGTCTGTTGCACCGCTATActtttgcaatgcatttttcaCAAAAAGATCCCCGATTTAGTGAGCTTTCACAATCTACCGTGCAGAACCTTAATATGCTTAATTTCAATATGTAAACCCTATGAAGTAATTGCCATGTAAAGTGTTTAGTAAAGTTTTCCTAACCCAAACTGTTTTAATCCACACAAAACCAACATTAACTTCTTAAGCTTAGGTTTGAGCGGTATCACCGCTAACGGCGCTGCTGTTTGACGGATGCGGTTGCAGTGCTCACAGCGTGTTCGGGCTGTACAATGCACGGCCGATTCCTGCCAAGGTTGTGCGTGGGCGTTGTGCTTAGCGGTCCGTATGCAGAGCCGAGCGGCTGGCGCCTTACAGAGAGCAGTGGACAgtggaaatattttgaatacCCCCTCCCTGCCTGAAATCCCTGATTATATTGGACACTACTGAGTTGAAATGGTGAGCCCTGTTTCCCACTATCGGTGATACCCAGATTCCCTGTCCGTATTTTTGCCAGGAAACCCTGTAGAGAGACCAAAGTGCTTGCTAGACGAAGACGACAAAGGTCAGCCCCGATCCCCTTGTGTTCGAAGAGAAAAGAAATCCCTGAAGTGACTgtaaatagatgtatttttgAGTGCAACCCAAGTgatttgagaaaaaataaacctgtgaTAAATTAATAGTATTACCACATCGTTGTAACTACTGAAGTGTGAACAAAATTAGCTTTACCCcaagtatatttataaatgttgcCCCTGGGAAAACGCTTGATCGAAAACATGCAAACCTGAAACGTGCAGCCACCAACCCTCACGGGGGGAGAGTTTGAGTCTGGAGCCCAGACAGAACAGGGTTCCTCAGCTCAGTTTGAGACAGGTAGAGACTTGGCTTGTCAGATCAGATCCTGGCCAGATCCTGAGAGGTTGGGTTCGGCACCAAAACAGTATTCATTAAGTCTTGTTGAGAATTCTTTAAACCGAGATTCGGTTGCAGAACAGTAGGGATGAATTTGTACCTGGAAAAAATCTGTAGTTTTTGGAAGTGGAAACGGATGGGCTTTGTCCCCCACAGCAAAACAGGTGTCCCCAATCCAGTCAGGAGTTAAttattgcagattttttttttaaatttaaacagaGTTGCTGATGTGGAGGCAATGTCAGTTCAGTCAGGGGAAGTGTGTTTTCAGACTGTAGCCTAAGAGCTGATGTGCCTGACTGGCTTTAATGCTCCTTAAATGATCTTTGCAGAAGAGGTCTTCTCCTGTATGCTCTGTTGCCTGTTTGAAGGGGAAATGCACTGAGAAGTGGAATCTCATTAAAGAAACCTTATTAAACAAACCATGGAACTGAATTTGATCACAGAAAGTATcagatatataatatttgtcTTCTTAAATACTCATGCCATGCCTTTTGTAAACGAAGCAGTGGACAAATTAGTTCCACGGAGTTATAGGAAAGAGCCATAAGAAATAAtgagatcaataataatatgaattttattaaaatgcacacaggAACCAGACAGTATAGGCCAAACGAGTTCTGTGATCTCTGTATGATTCTCAGACGGCTGTGGCAGAGTGAATATGACTGTGCAGTGCTGGTTAAATGCTCCTGCTTTCATTTGTCCTCTGTTTACCCATTTTCACACTCACCCTGCCCCAACTGTATCAAGATCACACTTAAAGTGGAGTGGAACCCATATCTACCAGTTCTAAAATGCAATCTCAGTCTGTAAGCTTTGAGGGGTCTGGGGTTTCTGGGCTGTGCATGGTGTAAGCCTGGTGGTGTTTTCGGGCTGTGCttagtttaaataatgtattgctgGATTGCAGGTCTTTCTAATCTGTCAGGCATTTTCAATGATAGGTACAAccgagtttttttttccacccttaGTTTTACTTAAGAGGTTTCAGAATCCCCAGGCAATGAAGAATCATTCAAAGAGAAACTGGCCCTGTTTTACCTCTGAGCAAGAACAACAACCAGAAGATCAAAAAGATTtacaacatacataaatacatacatacataaatatacacaccgcacacagtatatatatatatacatatatgtaggtctgtgtgtgtatatatgtctgtttgtatacatgtgtatagaTATATTCCATTggtagattttaaataaaaatgaaaatggctattttatttattaaca

Function

GO: NA

KEGG:

id description
K17601 WDR81; WD repeat-containing protein 81

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194320 lncRNA downstream 318750 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 453759 9435880 ~ 9437899 (-) True G154260
TU194274 lncRNA downstream 498325 9343755 ~ 9393333 (-) True G154237
TU194271 lncRNA downstream 559625 9331343 ~ 9332033 (-) True G154235
TU194270 lncRNA downstream 561125 9325522 ~ 9330533 (-) True G154234
TU194453 lncRNA upstream 183242 10089554 ~ 10091616 (-) True G154391
TU194464 lncRNA upstream 231116 10137428 ~ 10138925 (-) True G154399
TU194465 lncRNA upstream 238171 10144483 ~ 10144931 (-) True G154400
TU194684 lncRNA upstream 637222 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 669658 10575970 ~ 10576502 (-) True G154575
AMCG00005811 mRNA downstream 1075 9870078 ~ 9890583 (-) True AMCG00005811
AMCG00005769 mRNA downstream 30734 9838157 ~ 9860924 (-) True AMCG00005769
AMCG00005781 mRNA downstream 212573 9673690 ~ 9679085 (-) True AMCG00005781
AMCG00005782 mRNA downstream 252175 9633784 ~ 9639483 (-) True AMCG00005782
AMCG00005780 mRNA downstream 266029 9609091 ~ 9625629 (-) True AMCG00005780
AMCG00005809 mRNA upstream 37379 9943691 ~ 9946696 (-) True AMCG00005809
AMCG00005800 mRNA upstream 152609 10058921 ~ 10065450 (-) True AMCG00005800
AMCG00005801 mRNA upstream 162812 10069124 ~ 10081209 (-) True AMCG00005801
AMCG00005933 mRNA upstream 189832 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005931 mRNA upstream 200945 10107257 ~ 10123885 (-) True AMCG00005931
TU194289 other downstream 456718 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 799085 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 1766973 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1890318 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2103337 7785554 ~ 7788321 (-) True G153733
TU194621 other upstream 409068 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 409068 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 937529 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 999983 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 1004204 10910516 ~ 10912745 (-) True G154677

Expression Profile