RNA id: AMCG00005813



Basic Information


Item Value
RNA id AMCG00005813
length 810
RNA type mRNA
GC content 0.68
exon number 3
gene id AMCG00005813
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11092831 ~ 11097368 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGGTGGTGTtggtggtgctggtgctggtgctggtgatGGTGTTGGAGGCGGGCTGGCCGTCCCCCCCTGGCGTGGGGATTTGCAGCGGCACTGGTCTCTTCTTCGGAGCCATTTGTGGAGGATTTGGGACTGCTGGGGTATACGGAGAAGGGAGGCAGGATACTCCGGTGACAGCGAGCGGTGGAGCCCGAGGCGGAGCGGGCCTGGCAGGGGAGGAGCGTGGTATAGGCGGCGGGGGTCCCCGAGTTGGGCCGAGGGGGCGCGACTGGGTCTGGCTCTCGGCTGGGTGGCGGGGGACTCGGTTCGGGTCCCGGTTcaggaagcagcagcagcagcaggaggagccCCTCGGAATCTCGCGAGATCTCGCACCTACTCAATTCACGCTGTGTGATCGCCCCCAACTCGGGGTTATCAAGCTCGGAAAACGCGCACCCCGTTACTGCGGACATCCTGTCCCTGTTTTTGGGGTGCCGGGGCCTACCACGCTGGGGGCAGCCTGCGTCGAAGTAGAAAGCAATTTTCCGTGCCACTGTCGCTTTAACGGCCCGCGGCCACGCCCCCTGCCCAGCGCGGCCCCCCAGTCACGTGACGGGGCCGGCTCCGGATTGGCCGGCCGGCTCCCCCCGCACGTGACCCGCCGGCCTCTCATTGGCGGGCGCGCGCCTCTCTCAGTTTTGGCTCTCGCGGGGCTGCTGCAGGAAGATGGCGGCCGAGCTGGTGGAAGCGATGGCAAGTTGAGCTCCCTGCGCCGGGGCGAATGGGAGAGGGGCCGCTGGGGCAAGGGGAGCGGGGTCGGGCGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194890 lncRNA upstream 93442 10997649 ~ 10999389 (+) True G154722
TU194697 lncRNA upstream 378124 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA upstream 398878 10690143 ~ 10693953 (+) True AMCG00005835
TU194696 lncRNA upstream 424570 10667998 ~ 10668261 (+) True G154583
TU194687 lncRNA upstream 516394 10575979 ~ 10576437 (+) True G154574
TU194957 lncRNA downstream 77027 11174395 ~ 11180237 (+) True G154775
TU194983 lncRNA downstream 222596 11319964 ~ 11361770 (+) False G154798
TU195006 lncRNA downstream 264637 11362005 ~ 11362233 (+) True G154815
TU195007 lncRNA downstream 273056 11370424 ~ 11370912 (+) True G154816
TU195024 lncRNA downstream 281412 11378780 ~ 11379289 (+) True G154831
AMCG00005840 mRNA upstream 82970 11006798 ~ 11009861 (+) False AMCG00005840
AMCG00005869 mRNA upstream 130144 10929794 ~ 10962687 (+) True AMCG00005869
AMCG00005868 mRNA upstream 169284 10919948 ~ 10923547 (+) True AMCG00005868
AMCG00005867 mRNA upstream 180159 10906357 ~ 10912672 (+) True AMCG00005867
AMCG00005826 mRNA upstream 206584 10882619 ~ 10886247 (+) True AMCG00005826
AMCG00005812 mRNA downstream 1041 11098409 ~ 11103223 (+) True AMCG00005812
AMCG00005815 mRNA downstream 42430 11139798 ~ 11140832 (+) True AMCG00005815
AMCG00005816 mRNA downstream 73646 11171014 ~ 11172074 (+) True AMCG00005816
AMCG00005854 mRNA downstream 108019 11205387 ~ 11206589 (+) True AMCG00005854
AMCG00005853 mRNA downstream 145471 11242839 ~ 11243798 (+) True AMCG00005853
TU194931 other upstream 6820 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 82477 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 177102 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 362622 10722332 ~ 10730209 (+) False AMCG00005834
TU194591 other upstream 576441 10512504 ~ 10516390 (+) True G154499
TU194985 other downstream 222596 11319964 ~ 11325074 (+) True G154798
TU195111 other downstream 505059 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 806018 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1594448 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1595392 12692760 ~ 12696319 (+) False AMCG00005987

Expression Profile