RNA id: AMCG00005818


Basic Information

Item Value
RNA id AMCG00005818
length 2242
RNA type mRNA
GC content 0.59
exon number 14
gene id AMCG00005818
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10480210 ~ 10486749 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGGGGCTCATCCAGCAGTGCACAGCCGGACGTGGCCGTGGCTCGCTGGACAGTGCGGGGAGCGGGACGGGGCGCTGGACACACACCACCatcagcacacaacacacacaaaaaacacacgacacacacacgacacacacacgacacactTCCTATCCGCCGCGCCGCTGTGTCACAGAGCCGGAAGCGCACCGCGCCGCACAAACAACTGATCAActacaacagagagagagagagagagagagagagagagagagagaggtggggggtcTGATCACACGCATTTAATACAGCTGCCATATTCATTATCCTTTGTTTCTGATTGTTCTGTCCTGGTTATGATTAAACGAGCACTCGCGTAATTCAACACGATAAACAGGAgccggtgagagagagagagagagagagagagtgagagagagagaggaggggaggggaattAATATGAGAACAACAAAACAGGGAAACTGCAGAAGACAGGCGccttcattttctgtttgtcaATTATAAGCTCCAGTAAAAGCTCTGCCCGGGGACTGAACCCCTCGCCGCCCCGAGTCAGCGCCTCCAGCCGCCCGAGTCCGACCCTCTGCGGGACCCGCCGGCCGGAGGTGGAAATGGgctCTGAGCCGCCGTCTTCCCCCCCGGTGCtggaggagggggtggaggaggaggaggaggagctgagTGGGGGCGAGGATGTGGACACCAGGGTGCCCCCTGGCCGTGGCTCGGTACTGACACGGCGGGGTATCACGCTCAGGGTGCTGCTGAAAGACGGGCTGGTGGAGCCAGGCGACGGCGTGCTGTCCATACACTATCTgGGTAAGAAGTTTGTGGGTGACCTGCTGTCCGATGGAAAGATCCGCTGGGTGGAGACGGGTCAGGTGTTCAACTCCCCGAGTGCCTGGGCCACCCACTGCAAGCGCCTGGTCAACCCGGCCAAGAAGTCGGGCTGCGGCTGGGCCTCTGTGCGGTACCGCGGACACAAGCTGGTCCAGTACAAGACCAGCTGGCTGCAGAAGTACCAGCCCAGCGCTGAGGTGAGCTTGGCAAGTGAGGGAGAGGACGaggagatgggggaggaggaggaggaggaaggaaagACAGGCCTGGTGACGGAGGATAAGAACAGGAAacaagACAACATTCCGATGGTGCGCCGTGGAGACAGGGACCGGGTACCAGTGAGATACTGCACTCTGGGCAGCAGGGACTCTGGACGGtcaCCCTTCAACGTGGCCGTGTCCAGCAATGTGCTGCTCCTgctggattTCCACTGCCACCTGACGACCAGTGAGGTGGTGGGGTATCTGGGGGGGCGCTGGGACACCAACACACAGTtactCACCGTGTTGAGGGCGTTCCCCTGTCGCTCGCGATTGGCTGACCGAGACTCCGCCCCCGCCGTGGAGGAGGAGATCTGCCAGAACCTGTTCATGCGAGGGCTGTCGTTGGTGGGCTGGTACCACAGCCATCCGCGTGgccctgccctgccctcccTGCAGGACATCGACTCGCAGATGGATCATCAGCTGCGGCTGCAGGGGAGCAGCAACGGCTTCCAGCCCTGCCTAGGCATCATCTGCGGGCCCTATTACCACGGCAACCAGGGCGTGGCCTCCACTATAACCCCGTTCTGGGTTGTGCCCCCTCCCGAGCAAAGGCCCAATGACTACGGCATCCCGGTGGCTGTGGAGGTGACGTACGTGCAGGACAACTTCCTGACCAGCGACGTGCTGAACGAGATGATGCTGCTGGTGGAGTTCTACAGGGGGGCGGCCGACCTGGTGCAGTTTAGCCAGCTGTGGAGCCCTGAGACCAGCGTCCTGGAGAAGATCAAGgGTTCACTGAGTGGCCACGCCCCCAAGGACCAGGCTTACAGTCAGATCCTGGAGCATGTGTACAGCCAGCTGAGCAACACacactgaggagagagaggggggggtgggaggaagaaagagagcGGGTAGAGGAAGAGGAGTGAGTTTCCCTTTACCACACAGTCACCTCTCGGCTGCAGTGAATAGGACACCCACAGCGCAGCCTGTacccttcctctctcctcttggTTGCACCCCTCGCAGGACATTCAGAGACCTGCAGCCTCTCCCCTTCCGCCCCAGTACCGAgacagaatgttttatttttattgtttgtgttgttgtccttgtcattgttgtatttttgctGTGGGATCAGAGCATTTACCTGCTGAATACAGACACTGGAACACCACA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K24173 MPND; MPN domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194520 lncRNA upstream 123966 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA upstream 148116 10285514 ~ 10332094 (+) False G154447
TU194527 lncRNA upstream 151211 10328035 ~ 10328999 (+) True G154447
TU194536 lncRNA upstream 175301 10304218 ~ 10304909 (+) False AMCG00005851
TU194535 lncRNA upstream 176713 10302957 ~ 10303497 (+) True G154451
TU194598 lncRNA downstream 37218 10523967 ~ 10526052 (+) True G154505
TU194687 lncRNA downstream 89230 10575979 ~ 10576437 (+) True G154574
TU194696 lncRNA downstream 181249 10667998 ~ 10668261 (+) True G154583
TU194697 lncRNA downstream 203394 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA downstream 203394 10690143 ~ 10693953 (+) True AMCG00005835
AMCG00005821 mRNA upstream 10804 10462835 ~ 10469406 (+) True AMCG00005821
AMCG00005817 mRNA upstream 43708 10431563 ~ 10436502 (+) True AMCG00005817
AMCG00005819 mRNA upstream 51244 10423109 ~ 10428966 (+) True AMCG00005819
AMCG00005820 mRNA upstream 64073 10412525 ~ 10416137 (+) True AMCG00005820
AMCG00005851 mRNA upstream 175373 10297889 ~ 10304837 (+) True AMCG00005851
AMCG00005858 mRNA downstream 15758 10502507 ~ 10502822 (+) True AMCG00005858
AMCG00005856 mRNA downstream 16829 10503578 ~ 10507292 (+) True AMCG00005856
AMCG00005857 mRNA downstream 34107 10520856 ~ 10523831 (+) True AMCG00005857
AMCG00005804 mRNA downstream 129133 10615882 ~ 10623009 (+) True AMCG00005804
AMCG00005803 mRNA downstream 139700 10626449 ~ 10633432 (+) True AMCG00005803
TU194578 other upstream 8579 10470543 ~ 10471631 (+) True G154486
TU194579 other upstream 11859 10462537 ~ 10468351 (+) False AMCG00005821
TU194450 other upstream 392518 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 403708 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 596255 9881382 ~ 9883955 (+) True G154330
TU194591 other downstream 25755 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 235583 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 426648 10913397 ~ 10915729 (+) True G154636
TU194894 other downstream 520795 11007544 ~ 11010354 (+) True AMCG00005840
TU194931 other downstream 596412 11083161 ~ 11086011 (+) True G154756

Expression Profile