RNA id: AMCG00005822


Basic Information

Item Value
RNA id AMCG00005822
length 4627
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00005822
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10438294 ~ 10454640 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCGCGCGCCGCACGCAGTCGCACTTGCACGCTCGGACAGACGAGCCGACGGGACGGGCAGGACGGGCAGGACGGGTCACCCATCTGTATCCACCAGCAAAACCCACACTAGAGACACAAGCCCCTCTCTGAGACCGAGCGCAGAGCCcgacagCGTGTGGGAGTTTCAGATGATGGCCACAGGGATGCACCTGTGAGCTGCTGTACGATGGCTCCCTGCCTGAGCTCTGCAGGAGATGGCAGCAGCAAGTGTCCTCATTGGAGACTGACCCCGACATAACCGCTTAACACAAAGGCTGACACTGAGCCCTGCTCAGCATTGGAAAAGtcaacaaataagcaaacaaacaaacaggaacttTCCTTTCCTTCTGAGCATGCTTGCCAGTGCTGCAGTGAGTTCGTCCCCTGACCTCTGACACCTGAACCATGCACTGCTGTGTCTCAGGCCTGTGGTCTCTGTGCTGCCTCCTGCTCACGCTGCCCCCGATCACTAGAGCCTCCCAGGACTGCATCCCGCGCAAGAGCATCCCATACCAGAATGGCAACATCAAGGTGTTCAGAGAGGAGGGCTACACCAACTACACCACCATGCTGCTGCGTGAGGACCAGGGCCTGCTGCTCCTGGGCGCCAGGGAGGCCATCTACGCCCTGGACCTGGACGACATCTCCCGCAGGAAGTCCAGCGTGTACTGGAAGGTTCCGGAGGAGAAGCGGAAAGAGTGCACACACAAGGGCCGGCTTGAGGAGACAGAGTGTCGGAACTACATCCGCACTCTGCACAAGCAGCTGGGAGATGACGTGTATGTGTGCGGCACCAATGCATTCAGCCCCACCTGCGACGTCCTGAAGTACGAAGGCGGGCAGCTGAAGCTGGAAGGTAAACTGGAGGAGGGCAAAGGGAAGTGTCCCTTCGACCCCTTCCAGCGATACTCTTCAGTCATGGTCGATGGGGACCTGTACTCGGCCACCTCCATCAACTTCTTGGGCTCAGAGCCAGTGGTGCTGCGCAGCTCTCATACTTCCCTAAGGACCGAGTTCAAGAGCTCCTGGTTGAATGAGCCCAACTTCATCTACATGGACGTGGTGCAGGAGAGCGAGGACAACGCAGAGGGCGACGATGACAAGGTGTACCTGTTCTTCAGCGAGAGCGCTGTGGAGTATGACTTCTACAGCAAGCTGCTGGTGTCTCGGGTCGCCCGCGTGTGCAAGGCCCGTGTGGACTGCTCGGTGCTGGAGCCCAGCCTGCCCTTTGTTGTGCAGGACGTGTTCTTACTGCGCGCACCCAAATGGAAGGACAGTGTCTTCTATGGCGTCTTCACCCCGCAGTCGGGCTCCTCAGCTGTGTCAGCAGTGTGCGCCTTCAGTGTGCAGGCCATCTCTGAGGTGTTCTCCAAGGGCAAGTACAAAACGCCCATCACTGTGGAGACCTCGCACGTGAAGTGGGTGATGTACAGCGGCGAGGTGCCCGTGCCCCGGCCCGGCGCGTGCATCAATAATGCGGCGCGGAAGCTGAACATGCAGCGCTCGCTGGACCTGCCCGACAACACGCTGCAGTTCGTGCGCGACCGGCCGCTGATGAACGAGGCGGTGACCGCGCTGGGCGGCCAGCCGCAGCTGGTGAAGGGAGGAGCCCAGCTCACCCGCATCGCTGTGGATCGCGTGCGTGCGCTCGACAGCCAGCTCTACGACGTCATGTTCATCGGCACGGGTACGAGACCACCCACcggctgtctgtgtgtctcgaGTCAGTGGCAGGCTGCGGTTCTGACGCTGGCTCTGTGTCGTTGTCCCACAGAGAACGGCTGCCTTCTGAAGGCGGTGAACTACGATGGTGAGATGTTCATCGTGGAGGAGCTGCAGCTGTTCAACCCGCCGGAGCCCGTCAAGACCCTCCGGCTGTCTGCTGCCAAGGGTCAGCTGTATGCAGGCTCAGagtccagtgcagtgcaggtcCCTGTCTCTGAGTGCGGCCGCTACAAGTCATGTGTGGACTGCCTCCTCGCCCGTGACCCGTACTGCGGCTGGGACCGCCTGGCCTCTCGCTGTGCACTGGTCTCCAGCGGGGACCTCCTCGCCCACACGAGCCTGATCCAGAGTGTCAGACATGGCAACGCCTCTCAGTGCACAAACTCCAtgagggTCCAGCAACCGCAGAACTACACACTGGTCCCGGGCAACAACATCAAGCTGGTGTGCCACCCCGGCTCCAACCTGGCACAGGTGCACTGGCAGTTCAATGGCCACCACCTCCCTGGCCCCAGCTCCACCTCCAATCCCGGGTCCAAGTACTATTTCTACAGCGAAGGCTTGCTGGTCTTTAATGTCTCGGCGGCAGACGTGGGGGAGTACACCTGCCGCTCGCTGGAGAGGGCCAATGGGCAGCAGTACGCACTGACGGAGGCTGTGTACCGCCTGCAGCTGGGTGTTGTCCGGAATCCACGGGGGAGAGGGGCCGGGGAGGGCACAAACTCCACCCAGACCCCCCAGCCCAGCGTCCCCAACCCCAAGACTTCCCCAGTGGACCGCAACCTGGTGCCGTCCCTCCCTGCCCCACGGACGGAGGAGCGTGCGCTGGTGGCCCTGCAGGTCGCCGTGGGGCTGCTGGCGGCGCTGCTGGTGGCCCTGCTGGTGTGGAACCTGTACCGTGGCCACATCCCACTGCCTGGCCGGGGCGCAGGGGTGGCCAAGCCCCGGGGGGTGGAGGGGAGCAGGCTGCAGGGGGCCATGGTGGACAACTCCACCCACCGCCAGGTGCCCTTCCAGGCCAAGGTGCTGCCTGAGGAGAAGTCCCAGGTGGATGGGAGCAGCTGCCAACCACTGGTGGACAACTACCGCAGCCTCACCAACGGAGAGCCCACCCCCTCGCCCTGCGTTCCCCTTGACGGCTTCAAGTACATCGACGACGAGTCCGAGATATAACCGCAGAGGAGCGAGAGGAGCAGCTTTGGCAGATTGTCCTGGTGTGTTGTAGTTTCCGTTTGAATGTGCATTCACCACTGGAGTACTGCTGTGCCACTGTGCCCATCCCGCCATAGACACCTGGGTGGCCTTCTGtataacccccctccccacacacacacatacacacacacacacacacacacactctctcctgAGTGGCCACCTGTATAGCCACCCCACATGCATAAACTCCTGCATAGCCTGTATCACAGCAGACTAGGCTGCTCGGCCTGTTTTTAAGGATGCAGTTCCAGTTTGCAGAGTGCTGGGGTGTGCATTCCCAGTCTGAACTGGACCCTCACTGCCCTGCACTCCTGCCTGTGCTCTGAGACACACTCCGGACTTTGTCTGTGCCATCTTTGCAGAACATTAAAGATGATGTCAAGCTTTAATTGCAGTGCATCTCAAAAAACCTTTTCTTAATAACGTATCCTGATGGTGGACACCCAGTGTGGAGAACATGATTGTGGGAATACCAATGCCAATGCCTTAAGCCCCCAACCCTTGGGGTGAGGGGGTGACACACAGCTGTCAGTCATACCTGGATAGCATAACTCAcgtctgtatattttgtaagtgtAGAGTGATAGTGGACTGGGTTTCAGAGCTACTGTTGAGAGACCGAAAGTGAACATCTTGTGGAAGTATATCACTTTGATGACTGGTACAAAAAGATATGTATGTTTtgcagatttttaaaatgagtgattattttttatatatatatatatatatatataaaaacgtTTTTTATCCTGTTATTGTGTGTTGTATATTAGTATCAAAACTCTTTTGACTGCTCAGAGGATGCAGGTTTGAGGCAAAAAGTAGTTTTTTATCTCCACCAGCCCTGGTGCAGGAGagctacagtgcagtacagccgGGTCTTGAGAGTTCGATCCCCAGGTGTGCTACTCTCTGCGGTGACAGTTGGAGGCCATATATAACCCTGCAGGACTGATCTGTACTCCAGTGCTCACTGAGGAGCTGATTTCTACAGCTGAATGTGTTGCACAGTGGTGAAGGGGAGGGCTGGGGTTTGGGATTGACACACGAGCAGCTCCTGCAGGAGGGGAGTGCAGCATCTCTTCAGTGCAGTCCCCTTAGGAGAGCCCTGTGGTCTGGACCCCTCAGAAGGGCAGGACCAATGTGTGAAATGCATGTGGTGTACGGACCTGCTACTCTGCTCAGCCTGCTGCAGACCGGCCCAACTGGTTGGGCGAGCTGGGGGCAGGACCGGACACGCAGCGACTGTGTTAGAACGGCACCGAACAACAGTGTGTTTCTGCCGTGGGATTTCAGCTGCCTTCTCAGATCTCAGCGCTGGAGTGGCAGAGCGCAGATCAGAATTTCGCAGGCTTTGGCAACAGCCCTGGAAACTGAAAGCCTGACTTGAGAATGATTTACAGGGGTGTAGGAGCCCCAATTCCCTGAGTGGGTTGTGAGGAGCTTTTGTTTCTACTGCATTTccagcaaacttttttttttttttcaccctcaaatgtgtataattgtctcatgatttttaataaagaaatttTTACATCTGTGTTAATATTAATTGGTGCTAATCTGTTCTGCCCCTGCTGGAGTGATGTCTGTCTGGGCAGTGACCACTAGGGGCTGCCCAATGTCTGgcacaggatttatttttgtctgat

Function

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 293363 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 299369 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 346678 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 865386 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 1000395 9435880 ~ 9437899 (-) True G154260
TU194684 lncRNA upstream 88894 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 121330 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 235508 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 283904 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 347924 10802564 ~ 10818716 (-) True G154675
AMCG00005824 mRNA downstream 44143 10391215 ~ 10394151 (-) True AMCG00005824
AMCG00005825 mRNA downstream 50897 10384783 ~ 10387397 (-) True AMCG00005825
AMCG00005848 mRNA downstream 60616 10374423 ~ 10377678 (-) True AMCG00005848
AMCG00005849 mRNA downstream 67913 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005850 mRNA downstream 94292 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005823 mRNA upstream 15529 10470169 ~ 10478589 (-) True AMCG00005823
AMCG00005860 mRNA upstream 35238 10489878 ~ 10502682 (-) True AMCG00005860
AMCG00005861 mRNA upstream 54017 10508657 ~ 10519618 (-) True AMCG00005861
AMCG00005859 mRNA upstream 71506 10526146 ~ 10540046 (-) True AMCG00005859
AMCG00005862 mRNA upstream 90752 10545392 ~ 10551355 (-) False AMCG00005862
TU194621 other downstream 85512 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 86575 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1003354 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1345721 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2313609 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 389201 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 451655 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 455876 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 866097 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 882134 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile