RNA id: AMCG00005824


Basic Information

Item Value
RNA id AMCG00005824
length 2185
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00005824
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10391215 ~ 10394151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATTTTCCTGCCAAGCCTGTAAGGGCCAGACCGAGCCGCTCACTTTGCGGCTGTCCAGTGCGGCTGGTCTCAGTGACCCCTGCTGTGCCGTGCCGTACTGCAGTTCTAGACCAGGAATGGACCTGTGCTGTATTGTACCGTACTATAACTTAGggcagccccctccccaccccctgtCGGAGAGCATGGCTCAGGAGACCAATCAGACGCAGGTGCCCATGCTGTGCACTATGGGCTGTGGTTTCTACGGCAACCCCCGCACCAACGGGATGTGCTCCGTGTGCTACAAGGAGCACCTGCAGAGGCAGCAGGGCGGCGGCCGCGTCAGCCCACCAGCACCTACAGCCTCAGCGCCAGTGGTGGCCAGTGGGGGTGCCAGCGTGTCGGTGGAGAGTGGCCCTGCCCCTGGGTCAGAGGGCAGTCACGATTCGGAGGACAGCAAGGCCAGctcctccagccCTGTGACCCAGCAGATGACAGCGATGAGCATCTCCCGCGACGACGGCGCCTCGGAGTCGGACCGGACAGAGgtcgaggaggaggaggcggccCCCACAGCCACAGGGGCGGGGCTGGACGCAGCACGGGGCACCTCTGAGGGTGGAGACAAGACACCCGACAAGAGCAGGAAGAAGAATCGCTGCCACACCTGCCGGAAAAAAGTGGGGCTCACAGGTGAGACTGGGcacagggtgggggggcaaGGAGAGACAGGTGGGTCTGGGTACGAGTGCAGAGAAGTGGAGATGGGTGTGGTTACAGGGTTTGACTGTCGCTGTGGCAACCTGTTCTGCGCCATCCATCGCTACTCTGACAAACACGACTGTCCCTACGACTACCGCACCGAGGCGGCCGAGAAGATCCGCAAGGAGAACCCCATCGTGGTGGCCGAGAAGATCCAGAAGTTgtgagggaggagggagggctTGCTTTGTTtcgtttatatttttaattttgttttcgtTCCAGAGCGGATTGATTGGTGTTCAAATCCGATGAGGaaactttctctctttctcccccatCCCTCTTGcatttctctccccctctctccctccctctctgttgGAGCGTGGCTGTAACTTGTGGTGACTTTGTGGTTTCTGTGGAGACTGGACAAAACCAACACAGACCCCTCCCCAGCCTCCaactcctcctcttctcttccttCTCAAGGAGGGACAGTGTGAGAATGACTGACTGTGAATGGTGTGTTGACTCTGCTTGCTttgaggagaggaggaggataGAGGGAATAAGAAAGGGAGTGGGGGGTTTTAATGGGAAACAAAACGATTGAAAATCTTTGGGGGAGGTAGCTTttattcccttttttcttttggagtGTTCTGGTGTGAatgttcatttttataaatgggACCCCCTTTGTCCCTGTGAACACTGTTTGAATCCCTGAATGCTTGTGCTATATGGTTAagaggtatgtgtgtgtggggtggggtggggtgtgggggtCTCCTGAATGTGTCTGCTCTAAGGAGGATTTGGTTGATGTAGAGACTGGGAGTTTTCATGTTCAGAGCCGCCCTCTGGGCAGGAGTGGCATGGCTGCCCTGATTTGGTGTCAGCTGTGGGATACTCTGTTTATCCTTCCTCACTCTGGAAGCCTCCCCTGGCTTTTTATCAACCCAAACGAGTGATTCTGTAACCCTACTCCTGGCCCAGCTCAGTGGCTCCAAGCCCAGGTCCTGCAAGGCTCCCCCCACTGTTCCTCACTGTGTGTTGAGGGGAGTGTGTTTAGTCATTTAGTGTTTAATTGGGACTAAAACCCACAGACGCAGAACCTGTGCCTCAGAGCAAGGCCTCAACAGGCACCGGTCTGGTACCAGTACAGTTCTTTGGTCCAGCTAGCTCTAACATTGTagaatcaaacaaaatgtactaatCAAGAAAGTAGCTGACTGGCTGGACCAAAATCCTGCACAGGATTTTGACTGGAAGAGCCAGAGATGGAGCTGCaggatttttttccttttaaccagtttttaatgttaatattaaattattaaactcctagtctctctctctctctttctattattattattttttttttctttcaatttgacAAAACTAATTGTTGTGAGCATGTGCAGGTGTTGTAAAATGGAAAGGCGGGGGTCGGGAGGGAGGGTTGGGGTTTCAGGATAACGGGGTGACTGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 246284 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 252290 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 299599 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 818307 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 953316 9435880 ~ 9437899 (-) True G154260
TU194684 lncRNA upstream 149383 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 181819 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 295997 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 344393 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 408413 10802564 ~ 10818716 (-) True G154675
AMCG00005825 mRNA downstream 3818 10384783 ~ 10387397 (-) True AMCG00005825
AMCG00005848 mRNA downstream 13537 10374423 ~ 10377678 (-) True AMCG00005848
AMCG00005849 mRNA downstream 20834 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005850 mRNA downstream 47213 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005932 mRNA downstream 119691 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005822 mRNA upstream 44143 10438294 ~ 10454640 (-) True AMCG00005822
AMCG00005823 mRNA upstream 76018 10470169 ~ 10478589 (-) True AMCG00005823
AMCG00005860 mRNA upstream 95727 10489878 ~ 10502682 (-) True AMCG00005860
AMCG00005861 mRNA upstream 114506 10508657 ~ 10519618 (-) True AMCG00005861
AMCG00005859 mRNA upstream 131995 10526146 ~ 10540046 (-) True AMCG00005859
TU194621 other downstream 38433 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 39496 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 956275 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1298642 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2266530 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 449690 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 512144 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 516365 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 926586 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 942623 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile