RNA id: AMCG00005828


Basic Information

Item Value
RNA id AMCG00005828
length 2699
RNA type mRNA
GC content 0.58
exon number 15
gene id AMCG00005828
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10788554 ~ 10806283 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAATCGTTTATTTGTCCATAAAGGAGACGAGCCCTCGCTGCCAGCGTCCCCAGGAGCAGCCTGGCGATCTGGTGGGGGGGGCTGAAGGCATGTTGCTCCAGGACAGATACTGCGGCTGTGGGCTCCTGTGCCTGGCTGTCCTCTGTATTGTGGATGCAGCGGCGCCGGCCCAGCCCAAGgttctgtactgtgtgtgtgtggacagcgCCACCATCACCTGTTACTGGGACCCCGGGAAGGACCCTCCTGCCCACTCCAACTACAGCCTGAGCGTCAAAGAGACGGCAGGCACTAGGACGGTGTACCCGCAGGGGCTGCAGGAGCAGTGCTGGGCGCCGCCGGGGCAGCAGCACTGCACGGTGCAAGGAGGCTCAATCTACACCTTCTACGTTGTGCATGTGACGGCACACGGCCCCTGGGGAGAGAGCACCTCCGCCCCTCTGTATATGTGGTGCAAAGAGTCAGagaaGCTGCTCGCTCCAGTGTTGGTACAGGTGAGCAGGGTGCCCGGCCAGCCCCAGTGCCTGTGGCTGTACTGGGCACTGCCAAACCCCTCCACCAGCCACCGAGAAGAATCCTGTGTCTTCTCCCCCTACACACGCTACTCCATCCGGCTCCGGATCCACTTCCAAAGCAACAGCAGCCACTGGAGTGACTGGAGTTCAGCGCTGAAGTACCAGACGGACGAGGCTGCCCCCTCCTCAGAGCCTCAGTTCTGGTGGCAGATGGGGCACCTGACCGCAGACGGGCAGAGATGGGTGACTTTGCAGTGGAAGcCGCTGCCGCCGGGCCAAGCGAACGGGCACATCCTGGGGTACAACGTGACTTgctggtggggggaggggggcccCCTGATCCCCATGGCGCAGCAGGTGTGCGGCCACCTCCCCCCCAACCGGACCGCCTGCAGCCTGGCACTGCCCACCCAGCGCTTGCTCCCGCCCCCTGTGGCTCTGAACATCACCCCATTGGATGACCGCAGGCTGCGTGTGCGATGGGCAGCTCCTCTCGGCCAATTGGTGAGAGGCTACGTGGTGGAGTGGTGCCCCGTGGCATCCTGCGTCCAGAACTGGCACCGGCTGCCCAGCAACATCACCGAGACTGTCATCACAGAGGCGGTGGAAGGGGGGGTGCTGTACAACGTGTCGGTGCGGGCGCTGTACCCCCGCCAGGAGGGGGCGCCAGTCTTCTCAAGGCTCTACTCCAGACAAGGAGCGCCCACTGCTGGTCCCCAGGTGCAAGTGCTGGATTCCAGGCCTGGGCGCGTGCTGCTGCGCTGGGACCCCATCCCTCTGGACCACCAGCGCGGCTTCATCCGCAGCTACACATGTGTCCTGAACCTGCCGGCCGGGCTGTACCAGCTGCAGGTGTGGGCGAGCACAGAGGCTGGGAGCACTGCCGGGGATCTCATCAACCTGGCGATCGtggaTGAACACAACCCAGTCCTGGCCATTTTGATTTGCACAGGCCTGGTCCCGAACCCTGCGAACAGCAGCCTGGCCTCCTGGATCCCCAAGAACCTGCGCAGGGATTTCAAGCTCTCCATCACACAGTCTCAGTTCCCAGCCAGCATGAAGCTGCCCACAGCCTCGGCCACGCCCACCCCGGTCTCTGTGTTCCAGTCTGACCAGGTGGACAAGCAGTCCTCCGCCCCGCCCTGGCTGGTGCTGGACTGCCTGGCAGGGCTCTACAGCTCTGTGGATGTGACGCCCCTCGCCCCTGGCTACTCCCCCATATGTGTGCCCAGCCCCAGCCCCGCGGAGGCCGCCTCCCCCAGCGGCGACTGGTGCAAGGAGTATGCCGTGGTGGTCAACCCCACATACAGCAGCTGCCCTGGCCAGGACCCCCTCTCCTACATCAACTTGCTTGGACACCCCGGGACTACTGCCATGGCCCCCCAGCCCCTGGCAACCTCCTCTGAATCTGCTGCCCCCCCTCCAGGGTGCTCAGAGGATGGCgatggagagggagatggagagggagagggagaggggctcCTCAGGACCCAGCACTTGAGCACCTTCCCTCTGCTGCTCCAGTTCATCCTGCAGGAACCGGTCCACCCCCCCATCCAGACCACAGACTGACCCTGAACCCCCCGCCAACCTCCCCTGAGCCTGACCCCACCTTCACAGACAGCCCAGGGTGGGCACAGATGGACAAACATAcacaatcactcacacacacacacacatacacacaaaagcAACCACACGGCTTGCTGTTCTCAGGGCAGTGCGTTCATCCCCGGTGTATACGACCACACTCTACTTCTTCCTCATTCTCCGTTAGTTGGTGTATTTCAGATTTGTAATtggctttaaatatattttaagatttgtttattattattattatattttcttttgtacaaTTGATTGCAAGATGCATAACTTGAGTTTAAAGCCCCTCCGCTGCGGGGTCGTTTGTATCTGTCTTTGAAGTTTTCAATTCAATtagttttttgattttttttgataaatctgaaaacatgtttaaattacaaaacaaaggtTTCACGAATGTGTTTCTGAAGTGTGCAGAAAAGGTCTAATGttctaattatttttgtttaaaaacttaAATCGATTTCTCTGAATCCTGTTTCCTTATGTgtgatattattataatacttgTGAGATTAATtcgtttatttttgtcatttatgtttttattcaagaaataaatgtttctgagT

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194798 lncRNA downstream 45706 10738544 ~ 10742848 (-) False AMCG00005839
TU194763 lncRNA downstream 94589 10690148 ~ 10693965 (-) True G154642
TU194688 lncRNA downstream 212052 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 242951 10543534 ~ 10545603 (-) True AMCG00005862
TU194465 lncRNA downstream 643623 10144483 ~ 10144931 (-) True G154400
TU194827 lncRNA upstream 43335 10849618 ~ 10856409 (-) False AMCG00005831
TU194813 lncRNA upstream 104233 10910516 ~ 10912745 (-) False G154677
TU194875 lncRNA upstream 173275 10979558 ~ 10981714 (-) False G154715
TU194874 lncRNA upstream 173388 10979671 ~ 10982521 (-) True G154715
TU194873 lncRNA upstream 175682 10981965 ~ 10983480 (-) False G154715
AMCG00005838 mRNA downstream 11408 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005839 mRNA downstream 36440 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005805 mRNA downstream 123299 10659811 ~ 10665255 (-) True AMCG00005805
AMCG00005863 mRNA downstream 230799 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005862 mRNA downstream 237199 10545392 ~ 10551355 (-) False AMCG00005862
AMCG00005830 mRNA upstream 12587 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005829 mRNA upstream 23707 10829990 ~ 10837970 (-) True AMCG00005829
AMCG00005831 mRNA upstream 43232 10849515 ~ 10865796 (-) True AMCG00005831
AMCG00005827 mRNA upstream 61180 10867463 ~ 10869932 (-) True AMCG00005827
AMCG00005832 mRNA upstream 64319 10870602 ~ 10879010 (-) True AMCG00005832
TU194621 other downstream 435772 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 436835 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1353614 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1695981 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2663869 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 37558 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 100012 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 104233 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 514454 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 530491 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile