RNA id: TU194798


Basic Information

Item Value
RNA id TU194798
length 1335
lncRNA type sense_over
GC content 0.54
exon number 3
gene id AMCG00005839
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10738544 ~ 10752114 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTGCGTGCTGTCGCTCAAGTTCGCCTACTGCGGGAAGTGGTTTGTGAGCACCGGCAAAGACAACCTGCTGAACGCCTGGAGGACGCCGTACGGAGCCAGTATATTCCAGTCAAAGGAATCCTCGTCCGTGCTGAGCTGCGACATCTCCCCCGATGACCAGTTCATCGTCACGGGGTCCGGGGACAAGAAGGCCACCGTGTACGAGGTCATCTACTGAGGCCCCGCCCCGAGGCCAGGCGTGGGTGTGGTGACTGCACTGAGCCaatgagaggaggaggaggagtggcaTGGAGAGAACCAGTGAGCGAGCTGTGCTCCCCCCGGATGAtccttttatttgaaaaatgtgtttttttgtttttgtttcggAGAGAGTTTAAAACAGTCCCTGCGTTCGGAGTGCGAAGTGCGGCTGGAATCGgtgtcgggggtgggggggggagggtgagGATCAGAGGATAGAAAGACATCGAGAGAGTGATTCCTCCAAAGACtatctttttttcattttattttttaactgaaaaaggATTAAAGCTCTGGTAGTGACAGTAGCCAGAAGAGACTGAGACCTGATGACTGCAGATTCTTCAGAAGCAAAGACTGACTGGATTTCACTGACCTGGAGGGGGCAGGAGTCTGCGGTCTGCCCCAGTGTTTATTacctgtgtgtgggtgtgtggtgCAAAGACAGCCCCTCCCAATGCTGCATCCCTACAGCTCCACCCCTCTGTCACACATGCTGAGACACAGTGGGTTTTCCTAGTGTACCAAAAAAGCTTGACCTAAATTGCAGGTGAAGACAAGTTGcgcgcacaaacacacacagaaggaCGCACTCCGGCCAAGGGTGCAGTGGGCAGGGATGGAGGTGGCCAGACAGTGCAGCCTCTGCCCAGGAGAATGACTACTGCAGGTGGGCATTGTGGGATGGGAGGTGCTGTACATTAGGAGTTGTAGTTTTTGTTCGCCAGCCCCCCATCCCTCCTTTCCGGCATCGGTGCAGCCTCCTATACTCCAGTCCGGCTCACTGCTGGGCCTGGAGCGACACggtacagtccagtacagcagggtctccatcTTCTCAATGGCTGCCGTCTCCCAGTCTCTAGCCGTTGCATCGGGTTTGAATTTCCCGCTATGATGTATAAATAAGTTTGTGAACTCTGGTTCATTGCACTGGGGGAAGCACCCACTGCtctgttgattttctttttttgctgtaGCATCGTTCCTCTGctctccccctccatctctcctccCTGTGCAGACAGCGGACGGAGCGGCGCGGCCGTTTTCCCTGTCCTGGGACGGCAGGGTCGTGCTGTAattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194763 lncRNA downstream 44579 10690148 ~ 10693965 (-) True G154642
TU194688 lncRNA downstream 162042 10575970 ~ 10576502 (-) True G154575
TU194684 lncRNA downstream 192941 10543534 ~ 10545603 (-) True AMCG00005862
TU194465 lncRNA downstream 593613 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 599619 10137428 ~ 10138925 (-) True G154399
TU194807 lncRNA upstream 59716 10802564 ~ 10818716 (-) True G154675
TU194827 lncRNA upstream 106770 10849618 ~ 10856409 (-) False AMCG00005831
TU194813 lncRNA upstream 167668 10910516 ~ 10912745 (-) False G154677
TU194875 lncRNA upstream 236710 10979558 ~ 10981714 (-) False G154715
TU194874 lncRNA upstream 236823 10979671 ~ 10982521 (-) True G154715
AMCG00005805 mRNA downstream 73289 10659811 ~ 10665255 (-) True AMCG00005805
AMCG00005863 mRNA downstream 180789 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005862 mRNA downstream 187189 10545392 ~ 10551355 (-) False AMCG00005862
AMCG00005859 mRNA downstream 198498 10526146 ~ 10540046 (-) True AMCG00005859
AMCG00005861 mRNA downstream 218926 10508657 ~ 10519618 (-) True AMCG00005861
AMCG00005838 mRNA upstream 25943 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005828 mRNA upstream 45706 10788554 ~ 10806283 (-) True AMCG00005828
AMCG00005830 mRNA upstream 76022 10818870 ~ 10828071 (-) True AMCG00005830
AMCG00005829 mRNA upstream 87142 10829990 ~ 10837970 (-) True AMCG00005829
AMCG00005831 mRNA upstream 106667 10849515 ~ 10865796 (-) True AMCG00005831
TU194621 other downstream 385762 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 386825 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1303604 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1645971 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2613859 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 100993 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 163447 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 167668 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 577889 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 593926 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile