RNA id: AMCG00005848


Basic Information

Item Value
RNA id AMCG00005848
length 786
RNA type mRNA
GC content 0.69
exon number 2
gene id AMCG00005848
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10374423 ~ 10377678 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTTATTTGCTTATTCGGACTATTTTGCCGCCGAGTGCTTGGTGTCTATATCCAGTGGACCCGCGCTACACCGACCCGCTCCCCTGCTCGCCTCTGCCCCAGACCCCCGGCAGCTGCCCCGGCCTGTCCCGGGGCCCGGGGAGGCGGAGGGGTCCCGGGAGGACAGGGAGGTTCGGGACACCCTGAAGGAGGCGGCCAACCTGATCACCGTGGCCGGGATCCTCACGGATTTACACAGTCAGTTCCGGCCCATGTCTGCGTACTCGGAGAGCAGCAACTCGTCCCTCGGAGACCCCGACAGCCTGTCGTGTGGGGAGAGCGGCTACACCACGCTGTCCGACTCCACCACCCCGACCCCCAACGCCACCCCGTCCGCCACCCCCACGCCCGGCCAGCAGCCGCAGCGTGGGGCGGGTGAGGGCAGGTCGTCCGGGGGTTCGGCCCGGTCCCCGGTGAAGCGACACCCCTGCACCTTCGCCGGCTGTGATAAGGTGTACGGGAAATCGTCGCACCTGAAGGCGCACATCAGGACTCACACAGGTGAGCGGCCGTTCCCGTGCGTGTGGGTCGGATGTGTGAAACGGTTCGCCCGCTCCGATGAGCTGGCGCGCCACACGCGGACGCACACGGGCGAGAAGCGCTTCCTGTGCCCGCTGTGCGACAAGCGCTTCATGCGCAGTGACCACCTGGTGAAGCACGCCCGCAGGCACCCCGACTACACCCCCGCGCTGCTTGCCCGCGGGCCCCGCGCCGCCCCCCAGAGCCCCCCCCACTGCCTGTAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09238 ACE2; metallothionein expression activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 229492 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 235498 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 282807 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 801515 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 936524 9435880 ~ 9437899 (-) True G154260
TU194684 lncRNA upstream 165856 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 198292 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 312470 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 360866 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 424886 10802564 ~ 10818716 (-) True G154675
AMCG00005849 mRNA downstream 4042 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005850 mRNA downstream 30421 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005932 mRNA downstream 102899 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005930 mRNA downstream 177541 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005931 mRNA downstream 250538 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005825 mRNA upstream 7105 10384783 ~ 10387397 (-) True AMCG00005825
AMCG00005824 mRNA upstream 13537 10391215 ~ 10394151 (-) True AMCG00005824
AMCG00005822 mRNA upstream 60616 10438294 ~ 10454640 (-) True AMCG00005822
AMCG00005823 mRNA upstream 92491 10470169 ~ 10478589 (-) True AMCG00005823
AMCG00005860 mRNA upstream 112200 10489878 ~ 10502682 (-) True AMCG00005860
TU194621 other downstream 21641 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 22704 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 939483 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1281850 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2249738 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 466163 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 528617 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 532838 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 943059 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 959096 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062269 True 1949 mRNA 0.40 2 NC_007117.7 3809346 ~ 3813374 (+)