RNA id: AMCG00005849


Basic Information

Item Value
RNA id AMCG00005849
length 4876
RNA type mRNA
GC content 0.55
exon number 31
gene id AMCG00005849
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10355036 ~ 10370381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGACCGGTCGCCATTTTGTCAGCCATTTCCTTCCAGCTCCTCTGTATTCCGCAGAGAGTCTACCCGCACAGCTGCTGGACAGTGAAGCCGAGCTGCGGCACCTCTCGCCCGGAGCACCTTGCACACAGCCCCGGCGACTGACGCTCCCTCCCGGGCTGGCTTTCCGAGTGCAGCAGGGCCGGGCTTCCCCCTCCCTCCAGCCCTCCTCAGCTCCGCAGTCCCATTAACCCCGAAACACCCGCAACATTgatgataacaacaacaataattaattcatatcaAAGGGTAcagttctatatatatacacgtaagaaagaaacacaagaaaaaccGCAGCCATGGCTCTGAAGATGGTAAAAGGCAGCATCGACCGTATGTTTGataaaaacctgcaggatttAGTACGCGGCATCAGGAACCACAAAGAAGACGAGGCCAAGTACATCTCAACCTGCATTGATGAGATCAAGCAGGAACTGAAGCAGGACAACATCGCGGTGAAAGCCAACGCTGTCTGCAAATTAACCTATTTGCAGATGCTGGGCTATGATGTGAGCTGGGCTGCCTTCAACATTGTGGAGGTGATGAGCTCTTCCAAGTTCACCTTCAAGAGGATTGGTTACCTAGCAGCATCTCAGTGTTTCCATGAGGGGACTGATGTCATCATGCTGACGACCAATCAGATTCGCAAAgatctCAGCAGTCCAAACCAATACGACACGGGTGTGGCTCTGACAGGCCTGTCCTGCTTTGTGACCCCTGACCTTGCCCGAGACCTGGCCAATGACATCATGACCCTAATGTCTCACACCAAGCCCTACATCCGTAAGAAGGCCGTGCTTATCATGTATAAAGTGTTCCTGAAATACCCAGAGTCCCTGCGCCCCGCTTTCCCGCGGCTCAAGGAAAAACTGGAAGACCCTGACCCAGGAGTGCAGTCTGCAGCGGTCAATGTGATCTGTGAGCTGGCTAGGAGGAACCCCAAGAACTACCTGTCCCTAGCGCCACTCTTCTTTAAACTCATGACCTCGTCCACCAACAACTGGGTCCTCATCAAGATCATCAAACTGTTTGGTGCCCTCACCCCTCTGGAGCCTCGTTTGGGGAAGAAGCTGATTGAGCCACTAACGAACCTAATCCACAGtACCTCTGCGATGTCCTTGCTGTACGAATGTGTCAATACAGTGATTGCAGTGCTCATCTCTCTGTCCTCTGGAATGCCCAACCACAGCGCCAGTATCcaggtgatgaagTACCTGGGTCTGCTGGCCATGTCTAAGATCCTGAAGACTCACCCGAAGTCAGTCCAGTCACACAAAGACCTGATCCTGCAGTGCCTGGATGACAAGGACGAGTCCATCCGCCTACGCGCCTTGGACCTGCTCTATGGAATGGTGTCCAAGAAGAACCTGATGGAGATTGTGAAGAAGCTGATGCTGCATGTGGACAAGGCGGAGGGCACCACGTACCGCGACGAGCTGCTGACCAAGATCATCGACATCTGCAGCCAGAGCAACTACCAATACATCACCAACTTTGAGTGGTATATCAGTATCCTGGTGGAGCTGACCCGTCTGGAGGGCACTCGGCACGGGCACCTGATCGCCTCTCAGATGCTGGACGTGGCGATCAGAGTCAAGGCCATCCGCTCCTTCGCCGTGTCCCAGATGGCCTCGCTGCTGGACAACGCCCACTTGCTGGCCGGCAACACGCAACGCAACGGCATCTGCGAGGTCCTGTACGCTGCTGCCTGGATCTGCGGGGAGTTCTCCGAACATCTGGAGGATCCTCTGCAGACCCTGGAAGCGATGCTGCGGCCGAAGGTGTCCACACTGCCGGGGCACATCCAGGCCGTGTATGTGCAGAACGCTGCCAAGCTGCTGTCTGCCGTGCTGCGCCGCGCCGAGGGGGGGGGCGAGGAAGGGGCGCGCGTCGCCTCCGAGACCACCGAGCTCCTGGTGGACAGGCTGCCGCTGTTCGTGCAGAGTGCCGACCTGGAGGTGCAGGAGAGGGCGTCCTGTGTCCTGCAGCTGGTGAAGTACATCCAGAAGCTGCAGCAGAAGGAGGTGGGCGTGGCCGAGGAGGTGTGCGCGCTGTTTGCCGGGGAGCTGAACCCCGTGGCGCCCAAAGCCCAGAAGAAAGTGCCCATTCCTGACGGGCTAGACCTGGACGCTTGGATCAACGAGCCGCCCTCGGAGATCGAGTCGGAGGACGAGCGTCCGCGTGCCGTGTTCACTGAGGAGGAGCCACGGCCCCGCCCCCGACACGCCGACATCGACGAGAAAGAGCTGGCCaggCGACGGGAAGTCAGGAAGCAGGAGCAGGCCAACAACCCCTTCTACATCAAGAGCTCCCCCACTTCGCAGAAGAATGCCTTACCCAGTGACGAGGATGATAAAGACCCTAATGACCCCTACAAGGCCCTGGACATTGACCTGGACAAGGAACGGCCGTGTTCAGTTTTTGGGGATGCGGGCCGAGTGTCCGGGCCTCAGCTCAGGCCTCTGGCGGAGGGAGAGAAGCTGCCGGTCCGAACCCACCGTTCCCCCGACACCCCCAAGACCCCCGAGGGAGAGGTGGAGGCGCCGAGCGTGGGAGTGGTGGAAGGCATCCCCCCTGAGACACGGGTGAAGAAGAGCAAGAAggacaagagagagaaagacaagaaGAAGGACAAGGAGAGGAAGAAGAGcaaagaggagaagaaaaagaagaaacgGTCAAAGGAAGATGTGGAGGAGCAGGGGGAGGAGCCTCTGCAGGAAACCAGCCAAGCAGCAGAGAGCACTGAAGTGGGAGCCCTGCCCCCCGACACCATGCCCTCTGAGGCCTCTGATCTGGATTTATGGCTCTCTGGTGCCCCGGTCCCGTCCGAGACTCAGaaaTCCTTcaaacacaagaaaaagaaggacaagaagaagaaggagaaggaggaaaagAAGCCCAAGAAGAAGAAGTCTCATGGGGAGAGGGGCGAGTCTGAATCCGTGCAGAATGGAActctggaggaggaggaggagccatTGCCGCCCATGTCAAACTACTGCCTCCTGGGGGAGAACTCCTACATCAAAATGATGAAAGAGGAGCATGAGCTGGTATGCGATATCCAGGGGAACCTGCAGGAAGGCAGTCAGGTGGTGGTGTCGGTGATTTTTGAGAACAGGAGTGACGGGGTGCTCAAGGCTATGGAGTTCAACGTGCTGGACTCCCTGAACACCCGGCTGCAGCGTCCCCCGGGGGCCGGGCCCCATGACGGGATTGCGGTGCCCTTCCAGCTGCCCCCTGGAGTGTCTAACGAGGCGCGCTTCGTCTTTGCCGTGCAGAGCATCGTCACACCGCAGAAGCTCAAGGGCACCCTCACCTTCATAGTCAAGTCGGAGGACGGCTCATCTCACGAGAAGCTGGATTTCAAGCTGCACTTCACCTGTACCTCCTACCTGATCACCACCCCCTGCTACAGTGATGCGTTTGCGAAGCTGTTGGAGTCGGGGGATCTGAAGGCGGGCTCTCTGCGGCTGGAGGGCATCAGCATGCCCTTCACTCACCTGCTGGCCAGGGTCTGCTTCCACCACCACTTCTCAGTGGTGGAGAGAATCGACTCCTGTGCATCGATGTACAGCCGCTCCATCCAGGGCCACCACGTCTGCCTGCTTGTGAAAACGgtggAGCAATGCGTGACGATTGATGCCAAGTGTGACGAGGCGTCTCTCCTGGGTCACGTTCTGGATGAGATCAAGCTGACCTTCTCCCAGGAGTGCTGATACCCCCCAGACACACCAGAGGAAATACtacaccccccacacacctcCTGTATTAATCTTGACATTCCTCCCCGTCTCCCCATCTctattccctctctctctctccgtcatTCTACTCCTGATCCTGGACATGagcattatctttttttaactgATCTCTGTTTGTTGGTGCACTGTTCGTTTCTCCTGCCCACTCACACCTGTCTCCCCGCGCCCctgtgagtgtttttttttttttttttctcttccccccccAGCCTCTGCATCAATATTAATCTGACCCACTAACCTCCCAAGATGCGGTCCAGGGTGTCAAGCACTTACTGAGTGCGGCTCCTCGATAGCGCGCTCTCTCAGCCCAACTTTACTCAACCTGCCACCCTGTGTGTCACTGCCTGCTCTCAGaaacacattatacacacacacacgcacagacacattacacacacGCACCCGTAATTCATGCGcatcacacacgcacacgcaccccCACATACTGTTCCCGCTCCTGGGCCCCGTGTGCGTTTCCTCTCCCGCGTTGCAGTGGCCGGTTGTTACATTTCTAATGGGATTGTTTTCaactcattatttttttagtttttttgcccagaaaaataaatgaaaagtttGAATCTGAAACCTGTCCTACTCTTACCTGGAATGGctggggttttgttttgcattaagaTGAAagaattaacttaattaaagcCAAGCAGCTGGATCCAGGGGGGGGGCGCTGTTCGCTTTCGTTAGTACTTTTATCAGTGTTGGGTGATTGATGCTGACATGAAGAGGGAGGGAGCCGGGGGGTCCCCCGTCTTCAGAGGCCGCTCGTACGCCCCCGTCCTACAGTGGGTCTCTGATTTTGCTGGATTTTGGCCTGTGATTTGAACCTCAGCTCCCCTGTGTGATTATTCTCTTGATTTTATTATCAGTTGTAtgatgtgtttaatatatatttcaatgagtaaataaatgaatacaatacaaatcattCTGCTCTCCACATTCccttttaaatctgaaaaaaggaaagacaaagaCTCTTGAGCTGCTGTAGTCTGTGTGTAGAGGTGAACCAATAAACTCTGACGTATGATACGAGA

Function

GO: NA

KEGG:

id description
K12396 AP3D; AP-3 complex subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 210105 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 216111 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 263420 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 782128 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 917137 9435880 ~ 9437899 (-) True G154260
TU194684 lncRNA upstream 173153 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 205589 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 319767 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 368163 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 432183 10802564 ~ 10818716 (-) True G154675
AMCG00005850 mRNA downstream 11034 10295599 ~ 10344002 (-) True AMCG00005850
AMCG00005932 mRNA downstream 83512 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005930 mRNA downstream 158154 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005931 mRNA downstream 231151 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005933 mRNA downstream 255520 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005848 mRNA upstream 4042 10374423 ~ 10377678 (-) True AMCG00005848
AMCG00005825 mRNA upstream 14402 10384783 ~ 10387397 (-) True AMCG00005825
AMCG00005824 mRNA upstream 20834 10391215 ~ 10394151 (-) True AMCG00005824
AMCG00005822 mRNA upstream 67913 10438294 ~ 10454640 (-) True AMCG00005822
AMCG00005823 mRNA upstream 99788 10470169 ~ 10478589 (-) True AMCG00005823
TU194621 other downstream 2254 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 3317 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 920096 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1262463 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2230351 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 473460 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 535914 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 540135 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 950356 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 966393 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041502 True 3825 mRNA 0.53 33 NC_007133.7 22172272 ~ 22231720 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_04662934_04688901.mRNA True 4081 mRNA 0.51 33 CI01000030 4662192 ~ 4688901 (-)