RNA id: TU194621


Basic Information

Item Value
RNA id TU194621
length 691
RNA type TUCP
GC content 0.55
exon number 8
gene id AMCG00005850
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10295599 ~ 10352782 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gataaaataaaaATCTCCTGTTCGTTCCTACGTCCACTCTTGTAGGGTCATAGCAGCCCCCCATCTCTCGCCATGTCCAGGCTGCTGCTCCCGCTGCTGCTGTTGGGGCTGTGGCTGCCAGCTGTGACCCCTGCCCACTTGGTGATCCCAGAGGACTCAGGTTTGAAGGCTCTCTCAGACACAGGAGGCAGAATCCTCAAGaagaGGAGCTCTCCTGATGTGggtgCGTCAGATATAGATGTGTACAGTGTGAAGGTGGACTGTAAGGTGACCTCTCACTTCGCCCACAATGTGATGACCAGTCGAGCGGTCAACCGAGGCAATGTTTCCCATGAGGTCTTGTTTGACATGGAGTTGCCAAAGACGGCCTTCATCACCAACTTCAGCATGGTGATTGATGGAGTGACGTACCTGGGCCAGGTGAAGGAGAAAGAGCAGGCCAAGCAGCAGTATCAGCAGGCTGTGTGGCAGAGACAGACCGCCGGGCTGGTCAAGGCATCTGGCCGCAAGATGGAGAAGTTCTCTGTGTCAGTGAACATCGCGGCGGCCAGCAAAGTGACCTTCCAGCTGACCTatgaggagctgctgcagaggcacATGGGGCAGTACGAGATGATGATCCGGGTCCGACCCAAGCAACTGCTCCAGCACTTCGAGatCGTTGTAGACGTGTTTGAACCCCAGGGCATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 170449 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 176455 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 223764 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 742472 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 877481 9435880 ~ 9437899 (-) True G154260
TU194684 lncRNA upstream 190752 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 223188 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 337366 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 385762 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 449782 10802564 ~ 10818716 (-) True G154675
AMCG00005932 mRNA downstream 43856 10229868 ~ 10271524 (-) True AMCG00005932
AMCG00005930 mRNA downstream 118498 10187612 ~ 10196882 (-) True AMCG00005930
AMCG00005931 mRNA downstream 191495 10107257 ~ 10123885 (-) True AMCG00005931
AMCG00005933 mRNA downstream 215864 10096144 ~ 10099516 (-) True AMCG00005933
AMCG00005801 mRNA downstream 234171 10069124 ~ 10081209 (-) True AMCG00005801
AMCG00005849 mRNA upstream 2254 10355036 ~ 10370381 (-) True AMCG00005849
AMCG00005848 mRNA upstream 21641 10374423 ~ 10377678 (-) True AMCG00005848
AMCG00005825 mRNA upstream 32001 10384783 ~ 10387397 (-) True AMCG00005825
AMCG00005824 mRNA upstream 38433 10391215 ~ 10394151 (-) True AMCG00005824
AMCG00005822 mRNA upstream 85512 10438294 ~ 10454640 (-) True AMCG00005822
TU194289 other downstream 880440 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1222807 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2190695 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 2314040 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 2527059 7785554 ~ 7788321 (-) True G153733
TU194822 other upstream 491059 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 553513 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 557734 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 967955 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 983992 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile