RNA id: AMCG00005851



Basic Information


Item Value
RNA id AMCG00005851
length 858
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00005851
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10297889 ~ 10304909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGGTGAGCGGCGTGACAAAGCTGTACTTGAGGGACAGCTCCAGGGCGCGCGCCGTCTTGTTCGCTCTCTCTTCCGGGAACAAGAGGACAGTGTGCAGGGGCATCAGTACAGAGGACAGAGAGGTCAGGACACAGGACAGAGGAGTCAAGAAAGGGctcaacactacactacagtacccTGCACTTATTCATTcctgcccccctccctcctgctcACCTGAGGCGGGGTTCCCGTCGGTCAACAGGATGATGAGGGACACACTGTGGTCAGGCAGTCGGCCGGCAGCCTTGTCCTGCTCCAGCATGCGCACTGACTCCAGCACCGCCTGGTTTatgtctgtgcctgtgtgggGGGGCAGACAGGGGGCAGAGCGAGGGTTGCCACTTTCGGAAGCCGTGGTCGAACACAAGGAGGGCAAAGTAGTCGTCCACGTAGATTTCGCCCAGGATGGCATCGAGGGCCTCACGGGTGATGAAGAAGTTTCCGTCAATAAGGGTGGAGGGGCAGCCGACACAACTGCGCTGCTTCTCCATGtGGACAGTGACCCTCACTTCATCGTGCAGCCGCCCAATCAAAACGACACTCTGTGCTTCAACATTGACGAGAGCCCAGGGGTCATCTTAAACCTGGTCAGAGACCCCCAGACAGGCACGGTGGTGAATGGGCAGACTATCGCGGACAAGCACCCGGACCCCAGTGGCAGGGTGGGCACCTACTTCTGGCGCTTCGGCATCATGAGCCAGAGCCTGGGCCTCAGGCTGGACGTGTCCACACAGGGCATCGAGCTTCTGGATGCGCAAACCGGGCTGGAGCTCTCCTGGGACGAGTCCCTGACACTCAAGCAGCCCAAGTGA

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194448 lncRNA upstream 218453 10078307 ~ 10079436 (+) True G154388
TU194391 lncRNA upstream 353746 9905772 ~ 9944143 (+) True G154343
TU194291 lncRNA upstream 856508 9440493 ~ 9441381 (+) True G154252
TU194189 lncRNA upstream 1103702 9192296 ~ 9194187 (+) True G154175
TU194154 lncRNA upstream 1189519 9100429 ~ 9108370 (+) False G154147
TU194527 lncRNA downstream 23198 10328035 ~ 10328999 (+) True G154447
TU194560 lncRNA downstream 115069 10419906 ~ 10489854 (+) False G154473
TU194561 lncRNA downstream 136230 10441067 ~ 10489854 (+) True G154473
TU194598 lncRNA downstream 219130 10523967 ~ 10526052 (+) True G154505
TU194687 lncRNA downstream 271142 10575979 ~ 10576437 (+) True G154574
AMCG00005929 mRNA upstream 26429 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005927 mRNA upstream 36424 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005928 mRNA upstream 79564 10207320 ~ 10218325 (+) True AMCG00005928
AMCG00005934 mRNA upstream 161173 10132128 ~ 10136716 (+) True AMCG00005934
AMCG00005802 mRNA upstream 208120 10076345 ~ 10089769 (+) True AMCG00005802
AMCG00005820 mRNA downstream 107688 10412525 ~ 10416137 (+) True AMCG00005820
AMCG00005819 mRNA downstream 118272 10423109 ~ 10428966 (+) True AMCG00005819
AMCG00005817 mRNA downstream 126726 10431563 ~ 10436502 (+) True AMCG00005817
AMCG00005821 mRNA downstream 157998 10462835 ~ 10469406 (+) True AMCG00005821
AMCG00005818 mRNA downstream 175373 10480210 ~ 10486749 (+) True AMCG00005818
TU194450 other upstream 210197 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 221387 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 413934 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 708091 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 859620 9435900 ~ 9438269 (+) True G154251
TU194579 other downstream 157700 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 165706 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 207667 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 417495 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 608560 10913397 ~ 10915729 (+) True G154636

Expression Profile