RNA id: AMCG00005858


Basic Information

Item Value
RNA id AMCG00005858
length 291
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00005858
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10502507 ~ 10502822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGGTGCTGTGACGGTCGTCGCTGCGGCTGCAGTAGCCCGGTCGTGTGGGCGAGCGGATTCAGAGCTGGCGCTGGCCGTGTCTCCGATATTACATGGCAACCGCGGAGACTTCCTGTTCGCCCCGCTGCTCGGCGAGCGGACATTCCTTAGGAGCCTCGGGGGCGGGGCGCCACCGTGCTGCCCACAGCGACACCTGCCGGCCGGGAAGACAAAGCCCTGCACAGCCCGGGACGTGCGGGTGTGGGTCTCATACGGCACCGTGCAATGGGACGCTACTCCTTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194560 lncRNA upstream 12653 10419906 ~ 10489854 (+) False G154473
TU194561 lncRNA upstream 12653 10441067 ~ 10489854 (+) True G154473
TU194520 lncRNA upstream 146263 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA upstream 170413 10285514 ~ 10332094 (+) False G154447
TU194527 lncRNA upstream 173508 10328035 ~ 10328999 (+) True G154447
TU194598 lncRNA downstream 21145 10523967 ~ 10526052 (+) True G154505
TU194687 lncRNA downstream 73157 10575979 ~ 10576437 (+) True G154574
TU194696 lncRNA downstream 165176 10667998 ~ 10668261 (+) True G154583
TU194697 lncRNA downstream 187321 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA downstream 187321 10690143 ~ 10693953 (+) True AMCG00005835
AMCG00005818 mRNA upstream 15758 10480210 ~ 10486749 (+) True AMCG00005818
AMCG00005821 mRNA upstream 33101 10462835 ~ 10469406 (+) True AMCG00005821
AMCG00005817 mRNA upstream 66005 10431563 ~ 10436502 (+) True AMCG00005817
AMCG00005819 mRNA upstream 73541 10423109 ~ 10428966 (+) True AMCG00005819
AMCG00005820 mRNA upstream 86370 10412525 ~ 10416137 (+) True AMCG00005820
AMCG00005856 mRNA downstream 756 10503578 ~ 10507292 (+) True AMCG00005856
AMCG00005857 mRNA downstream 18034 10520856 ~ 10523831 (+) True AMCG00005857
AMCG00005804 mRNA downstream 113060 10615882 ~ 10623009 (+) True AMCG00005804
AMCG00005803 mRNA downstream 123627 10626449 ~ 10633432 (+) True AMCG00005803
AMCG00005835 mRNA downstream 177115 10679937 ~ 10690305 (+) False AMCG00005835
TU194578 other upstream 30876 10470543 ~ 10471631 (+) True G154486
TU194579 other upstream 34156 10462537 ~ 10468351 (+) False AMCG00005821
TU194450 other upstream 414815 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 426005 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 618552 9881382 ~ 9883955 (+) True G154330
TU194591 other downstream 9682 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 219510 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 410575 10913397 ~ 10915729 (+) True G154636
TU194894 other downstream 504722 11007544 ~ 11010354 (+) True AMCG00005840
TU194931 other downstream 580339 11083161 ~ 11086011 (+) True G154756

Expression Profile