RNA id: AMCG00005859


Basic Information

Item Value
RNA id AMCG00005859
length 3646
RNA type mRNA
GC content 0.61
exon number 16
gene id AMCG00005859
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10526146 ~ 10540046 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGGCACTGCGAGAGGCTCCCGCCAATTCTGAGCAGCGAGCGGCAGCGGGCAGGGAGACGCGCAGCGCGGCGGAGCGGCGCACACACACCGgccttttcatttcagttcagcTTCATATTCGCACATAAGTCACGAATTAATGTGGTAACTAATCCCGACCAGGGTCCGTCGTCTCTGTCTCCGGGGGCGGGCTGGGTCTGACGAGCAGAGGACCGCAGGCTGAACCCACTTTTTCCCGAGCGACATTGTCATTTATGTGGGGTTGTGCTGCGGATAATTGCGCCCAAGTTCTCGAATCCAGGCCCGGTGTCGGCGGCTGATGTCGGCGGCGGAAGAGCCGTCCTCGGAAGGGGCCACCCCGAGGAGAAGAGGTATGGAGTGCAAGATGACCAGTCCTGCAGCTAAGAAGAAGCTCGTCCAGGcCCGTCTGCCCTTTAAGCGCCTGAACCCGGTGCCCAAGCAGAACGGGGAGTCCAAGAAGCCGCGGGTGCCCCCCCCTGCCCCAGCGCCCCGCAGCCCGGAGCCCGGCTCCTCTGACGCAGAGAACGAGCAGGAGCGGCCCCCTCTGGTGAATGGCCGGGGGCCCCTGGACAGTTTCATGACCCGGGGGGGGTGTCAGAGACAGCACACTGCCCAGCCCAGCGTCACCATCGACCTGACAGAGGACTCCAACTCCACCCCAGCTCCGCTAACTGCCCCTGAGTGCCCCCTGGCCCACCATCCGTCCTCCTCTGGCCCCCCAGCCCATGACAGCCAGGTGGAGGGGTCTCCTGCCCCCACCAAGCCCCATAGTCCTGCCGTCTCCATGGAGACCAGCCCCTCGGACTGCGAGAGGGGGGGTGCAGTGAACGGAGGGCCCATCGCTGTGCctctggagaaggaggaggaagatgacgaagaagaagaggaggaggaggaggaggaaggggatgTTAGTGCCGCACAGGCCTCAAACATCAGCCAGGagacagaagaagaagaggaggaggaggaagaggaagagaaggatGGAGAtggtgagggagaggaggagtcCAGCCCAGAGAACGAGTCCATGCTGTCGCcttcctcctccagctgcctGTCTGCAGTGGAGAGCTCCCCTGAGCCAGCCAGCACCACGGCCCCCAGCACGGCGCCCGCCCCCCCTGAACAGAAAACCAGGAAGACAGTGGAGGAGAAGAAGGTGAAGAGACGCTCTCTGAAGAGCGaggagcagcagcaacagcagcaacagcggcggcagcagcagcaggcggAGCGCGAGGAGAGGGAGCGGCAGCGGCAGGAGGCGCGCGCCGCCCGGCTCAAGGCCCAGGAGGAGGCCCGGCGCcgcagggaggagagggagcgcgagaagaaggagaagagggagaaggaggagaaagagaaggcCGAGAAGCTGAGGGCCAAGGAGGAGCAGCGCAAAGTGAAGATAGAAGCCAAActggaggagaagaggaagaaagaggaggagaagcGTCTGAAGGAAGAGAAAGACCGCATCAAAGCAGAGAAAGCAGAGATCACCCGCTTCCTGCAGAAAGCCAAGACTCAGCAAGCACCAAAGACTCTGGCCGCTGCCTGTGGGAAGTTCGCTCCATTTGAGATCAAGGAGAACATGGTCCTGGCGCCGCTGACCCGGGTGCAATGTGACGAGGAGGTTCTGGAGCGGCTGGACGTGTTCTTGGTCAAGCCCGATGACAGCCTGGACAGCCGGCGGGACTGGCTGCACCGCCAACACCGACGCTCCGGCCCGACCCTGCCCAGAGAGACCAAGGCTGCGAGCAGCGAGTGCGTGGTGCTGGTTGACGGGCCGGGGCCGGCGGCTGGGCCGGACCGGGCGCAGTGCGGGCGCCTGAAACTGCTGCAGTTCCACGAGAACTACCGACCCGCCTACTGGGGCACCTGGAGCAAGAAGAGCCAGCACATCTCCCCCCGCTGCCCCCTGCGCCAGGACAAGGACCTGCTGGACtacgagttggacagtgacgaggagtgggaggaggaggagccggGGGAGTCCCTGTCCCACAGCGAGGGggaggaggaggaagaaggcGGTGAGGGGGTGGAGGCAGGGGATGATGACGAAGACGATGATGGGTTCTTCGTCCCCCACGGTTACCTGtcggagggggagggggcgtCGGAGCCGGAGGAGGCAACAGACCCAGAGAACCAGAAGGTGCGCGCGCGTCTGAAGGCTCGAGAGTGGGACGAGCTGCAGGCCAAGGGCAAGAAGTTCCGTGTGCTGGAGCCGGTGGTGATTGGCTGCGTGTGGGAGGGCCAGGGGTCGGAGGTCAGGACTCTGCAACAGCACGCCGTGTGCCTGCTGGAGGCGCTGCCCCGGGACGAGGGGGGCACGCCTGACGCCAGTGCCCGAGAGAAGAGAGATGACCAGATCCTCTCTCAGATCCTGCCTCTGCTGCATGGAAATGTGCACAGCAGTAAGATCATCATCACGGAGTTCCAGGAGTTCTGCCGTCACAGACCCCCCACGCAGCCCCTCAGCCCAGAGCCCGGCAGCAGCAGCCCGCCCACCAGgtACCGTCTGAAGCGGCTGATCTCGGACAGTGCTGTTTATGAGAAGCGCCCGCTGTTCCGCCGCTGCTGCTGGTATGTCAACCAGGAGGTGCTGTCCCGCTTCGGCCAGGAGGCGCTGCCTGTGCCCTGCCAGTGGAGCTACCAGACCCAGGGCCCGCCCGCCACCGCCCGTGATGAGGCCCCCCCCGCACTGCCTGGCTCCGGCGGCAGCAGCACCACCCCCCCCTCCGCTGCCGCTGCCTCCCCCCTCGCCACCGCCGGCTCCGGCAGCAGCAAGAGGAAAAGCACCGGCAGTATCTCCATCACCAAGTTCATGAAGAAGTGTGCTGACAGAGAGCAGGCGGAAGCCATGGAGACAGACGGATTTCAGGCTGACacggaggaggacgaggaggagccAGACTGTATCATCGTGGAGACCCACAGAGGATCGACACGGGAGAACGGCTCCGGAACACGGAGTGAGAACACGGAACACATGGAGGTCACGACCCCTGACCCAGCTgtcactgctgctgctcccCCTCCCTGCCCTGCCCCCTCCAGTGCCTAAGAACTGCCCTAATGTGAGAGTCAGTGTCTGAGAGGAAAACCCTGTACCACACAGACACGCACCCCCCCAGTTGCACAGGAACTCTTGTCGGTGCCAGtgggactgactgactgactggattTCACACAGCATTCCTGGATCAtcagttttattctttttattatgttttcatcGATGTACACTTCTTTCTCATTCAAAAATACttgaactgtttttctttattaaaaaaaataataataatgataaaatcgAAATGTATCTATGGCACTTTCATGTCCGTTCTCCTCAGCCTGTTTGTAATTACTTCTCCCTCCTTCACCTCAGAGgaatgtcaaaaaaaaaaaaaaaaagccagagaTCGACTCTCCCCGCATCCATCTCTCCGTCCCTGTCTATCTCTCCGTCCCCGTCAGTTGATCCCCAgttccctctgtctgtctgttgttcCCCAGGAGTGGGAAAAGGTCTCTTATGaacatgtctttaaataaaGAGTTATTTAAACACCAGCCCAAGCTCTTGGTATGTGGAGGCAGTCTGGCC

Function

GO: NA

KEGG:

id description
K10750 CHAF1A; chromatin assembly factor 1 subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 381215 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 387221 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 434530 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 953238 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 1088247 9435880 ~ 9437899 (-) True G154260
TU194684 lncRNA upstream 3488 10543534 ~ 10545603 (-) True AMCG00005862
TU194688 lncRNA upstream 35924 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 150102 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 198498 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 262518 10802564 ~ 10818716 (-) True G154675
AMCG00005861 mRNA downstream 6528 10508657 ~ 10519618 (-) True AMCG00005861
AMCG00005860 mRNA downstream 23464 10489878 ~ 10502682 (-) True AMCG00005860
AMCG00005823 mRNA downstream 47557 10470169 ~ 10478589 (-) True AMCG00005823
AMCG00005822 mRNA downstream 71506 10438294 ~ 10454640 (-) True AMCG00005822
AMCG00005824 mRNA downstream 131995 10391215 ~ 10394151 (-) True AMCG00005824
AMCG00005862 mRNA upstream 5346 10545392 ~ 10551355 (-) False AMCG00005862
AMCG00005863 mRNA upstream 11378 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005805 mRNA upstream 119765 10659811 ~ 10665255 (-) True AMCG00005805
AMCG00005839 mRNA upstream 199614 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005838 mRNA upstream 228745 10768791 ~ 10777146 (-) True AMCG00005838
TU194621 other downstream 173364 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 174427 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1091206 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1433573 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2401461 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 303795 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 366249 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 370470 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 780691 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 796728 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile