RNA id: TU194684


Basic Information

Item Value
RNA id TU194684
length 2070
lncRNA type sense_over
GC content 0.57
exon number 1
gene id AMCG00005862
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10543534 ~ 10551355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCCCGCCGCGCGCTGTCCGCCCCTGGGGAGGCCCTGCACTGGAGCCCCGAGAGCCTAAACTTCAACAGCAACAACGCCTCTCACGGGCCCCCCCACTATGCCAACCCCTCCCGGCGTGCTGTGCTGCAGCCCCCGCAGGCACTCAGCAGCCTGGCCGACCTCAGAGAGCTGCTCAGTAAGGGCCACGAGCGGACTCCCTCCGGACAGTGAGCACGGCCCTCCCTGCCCCCGCCTCGCCCTCTCTCCTGAGCGGACTGTAGCTGCAGAGAGAGGACAGGCCTGTCCCTGGGGGCCCTGTGGGGGGCTGTGTGGGGACACTGCAGGACAGCTAGGACACAATCAGCTGCCGACGGTCCCGCTGCTCTGAAACATCCCCTAATATTAGACacactgccctgccctgccctgccctgcctgtCCTGTCTCTTACCCTGCCTTCTGTAGCCAAGCCAAGGACTGATGCACAGTGGACAGTGTCCCCAAGACAGGGACAGGAGAGCAGGGACACTACAATGTGGGGAGCCAAGGAGGGACACCGGTCTGTGAGGAGAGCAGGCCGATGGGAATCTCAGGGACTCGGTGGCGCATTGGCAGCACTGCCCCTGTGCATTCTGGGAACTGTCGCTCACTGAACGTGCTGTGTTGATGTGATGGCTAGGAGCAGCGCGGTGAGAGAGCCAGGCCGGAGTATTAGCCGTGTCCAGCACTGACCAGCACAGTACTGCCCCTGACCCGGTACCAGTGCCCCCTCTACTCCAGTGATCTCTTGAATGCTGTGTAAATGACCCTCACCCACCCCCCATTGTGCCAAACACAGCTGATTAGACAGAGTGGGTCAGTGTTGCTAATGGGCTAAGAGAGAAAGATAGATGAATAGAGAGAatgagacacacatacacagtgaaCTGGGACTCACGTTCTTTGGCTCTCTGAGACCTGAGATGAGCACCACCATCCCTGTGCACTGGATCCCCACAGCCAATCACTGCACTGGATCCCCACAGCAGCCGTGCATCCTCTCCTCGGCTCTCGGATTTCTCCACAGGCTCGGCTGCTCCACCTCCCCCTCTGTAAAGTGTGTGTCCCCCCACCAAGCACGGCTCCCCCACTCTGTCCCGTTCACCGAGTGGAccgcgccccccccccccccccccccccccccccccacgcacACCCTGAACTGATAGGGGTCTCAAAGAGAAAGACAAGGAAAGGAAGACGGAGAGAATCAGTTTTCAACGGCTGCACCCCTGTACAGATTCAAGAGAAGCACAagattttttgcatttttgtaaagtCCTAGAGAAGTACAATAGACAGCACTGATTACAAATGTcgatatatttttacttttttttttccggtCGGCTCTGATTGTTCCGTTTGTTTTggggtttgatttgatttgactgGATGTTCTGTTTCTGCGCTCCTTTTGGAATTGTGTTGCTTCAGACAGCGTGCGTTTGTGGCAGGACTGTGTAGGGGCTGGCGGTGCCCACAGCTGGCCACCTGTCCATCTGGTTGTGGTCTGGAAgcagggtgggtgggtggggggggatggCACACCTGCCCTCTGACCCTATTAACCTCTTGACCCCCGCCTGTCCCCCCATAAGAGTGCCAGTGCTGTTTCGGACAGTGCTCTGCTTCCCCCTGGTGGTCTGGGGTGGCACTGCGCTGTGAGGGGAGGGGCAAGTATAGCACCCCACTACCTGCAATACCATTAAATCCTGAGAGTATATTTTATAACTGTCttgcaatattttaattctaTAAAATGCGGAGACAGGCACATGTAACTTAACCCCTTCCTGCTCGAGCCCCCCAGGGTACAGAGCTACACCACTGCCTGCATAACATGGGATTTCAAaatgacccctgacccctgatcTGCCCACAGCCGCCCTGACAGCCCTGTCTGTCACACTCCAGACACTCTGCTTGCTCTCTGTCATTCTCTCACTCGCTCACTCTAGTTCTCTCTAACTCATTCTCTCTCactatcactctctctctcactctgccaCCTTTCTTATTCTAATAAATGATCCGAATGTTTCCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194465 lncRNA downstream 398603 10144483 ~ 10144931 (-) True G154400
TU194464 lncRNA downstream 404609 10137428 ~ 10138925 (-) True G154399
TU194453 lncRNA downstream 451918 10089554 ~ 10091616 (-) True G154391
TU194320 lncRNA downstream 970626 9572215 ~ 9572908 (-) True G154280
TU194299 lncRNA downstream 1105635 9435880 ~ 9437899 (-) True G154260
TU194688 lncRNA upstream 30367 10575970 ~ 10576502 (-) True G154575
TU194763 lncRNA upstream 144545 10690148 ~ 10693965 (-) True G154642
TU194798 lncRNA upstream 192941 10738544 ~ 10742848 (-) False AMCG00005839
TU194807 lncRNA upstream 256961 10802564 ~ 10818716 (-) True G154675
TU194827 lncRNA upstream 304015 10849618 ~ 10856409 (-) False AMCG00005831
AMCG00005859 mRNA downstream 3488 10526146 ~ 10540046 (-) True AMCG00005859
AMCG00005861 mRNA downstream 23916 10508657 ~ 10519618 (-) True AMCG00005861
AMCG00005860 mRNA downstream 40852 10489878 ~ 10502682 (-) True AMCG00005860
AMCG00005823 mRNA downstream 64945 10470169 ~ 10478589 (-) True AMCG00005823
AMCG00005822 mRNA downstream 88894 10438294 ~ 10454640 (-) True AMCG00005822
AMCG00005863 mRNA upstream 5821 10551424 ~ 10557755 (-) True AMCG00005863
AMCG00005805 mRNA upstream 114208 10659811 ~ 10665255 (-) True AMCG00005805
AMCG00005839 mRNA upstream 194057 10739660 ~ 10752114 (-) True AMCG00005839
AMCG00005838 mRNA upstream 223188 10768791 ~ 10777146 (-) True AMCG00005838
AMCG00005828 mRNA upstream 242951 10788554 ~ 10806283 (-) True AMCG00005828
TU194621 other downstream 190752 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other downstream 191815 10315380 ~ 10351719 (-) False AMCG00005850
TU194289 other downstream 1108594 9425290 ~ 9434940 (-) True G154250
TU194148 other downstream 1450961 9090422 ~ 9092573 (-) True G154142
TU193709 other downstream 2418849 8091748 ~ 8124685 (-) True G153806
TU194822 other upstream 298238 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 360692 10906295 ~ 10910432 (-) False G154677
TU194815 other upstream 364913 10910516 ~ 10912745 (-) True G154677
TU195013 other upstream 775134 11320737 ~ 11325067 (-) False AMCG00005876
TU195016 other upstream 791171 11336774 ~ 11339114 (-) False AMCG00005877

Expression Profile