RNA id: AMCG00005865


Basic Information

Item Value
RNA id AMCG00005865
length 3038
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00005865
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11495141 ~ 11507437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCGGCTCACCAGGCGGTGTCAATACTTTCAATTTCTTAACAAACCGGCCCTGTGTTTCCTGCCTGACGAGTACTGTGCTGCATCTTGCTTGCGCTACACTTTGCACCGAGCTGTGcagtgggggggggagaaaaaaaaaataagttgccTAGTCATGCTGATGTCGAAATTAAACTGGAAGAGACAGCATTGAGCGCAATGCCTCCAGCACTGGTGtgtgggagagacagacaggaagagggAGACAGCATTGAGCGCAGTCTAACCTGCAGAGCTCAGGAGGCGATATTACATTACAACCACCAGCCAATTAACCCCCCGGAGCCGTCATTAGCTGCCAACTGAAGACCAGGTGGGGCTGAGCCCAGAGTTGCTCTAATCGTGCCGCTTAGGGGTTAGGGCAGCGCGTTGTTTCTGTCCGTGTTCacgttttttggggggatttcaTAGTTGGTCGCGCTTCCAAGGACGGACGCAGCCTACTATGCCACAGAACCACAGCTAGCGACACAGCTCACCAACGGTTTTGTGCTGCTGGCTTGTCTAGGCTGCACACCCAAGCAGCTCTGGGATAGAAGGGTCTCCGCGTCGCCTTTTAAAGACCCTCGTCAACTCTCCTCTGAGTAAGGTGCAGAGAGAGGCTTAATCCTGAAATAAAAACTCATTGACTAGTTTTCTTATGGTCTGGCAAGGATTCAAAGAGGAACTACCATCTACCAGAGAGACCTGCTCCCAGCTCCCGGTCAGTCTCCGTTTGTCCTGAAGGGCACCCATACCATGTGTTGATTAGGCCCGGCGAGGACTGACCAACATTGCCATGGAGACTCCCTAGAGGTGGAGGCCCGAAGGTTTCCCGGCGTGGCTCCAAGTCATGCTCGGCGGGGTTCAcaagacaaccacaaaaaaacagtcCTCCCTGTAACCCCCACTGTCCCGCCGCTGAGACTCCGCACCGGGCAGGTGGGCATTCGCAGGACGATGATATGCCCCAGGAGGAGGAAACCTGCCAAAGCGGAGGATTTATCTGCCATCGCCGTCCCATCCATGAAGGGTCATGGCTACCTGGACTACACCATCGAGAGCCATCCCGCCAGCGCCCTGAAGATCATGGATGAGTTCCGGCAACATGAGCTGCTATGTGACCTGGTCATCCACGTCACCTACAAAGACACACAGGAGGACTTCAAGGTGCACAAGGTGGTGCTGGCCTCCTGCAGCCCGTACTTCAAGGCCATGTTTACCAGCAACTTCCGGGAGTACGGCGCCTCGGAGGTGACGATCCAGGATGTGAGCCCGCGCGTCATCGAGCGGCTCATCGACTTCGCCTACACAGGCCGAGTGACGGTGGGCGAGAAGTGCGTGCTGCATGTGCTGCTGGGGGCCATGCGCTACCAGGTGGAGGGCGTGGCCAAGGCCTGCTGCGACTTCCTGGCCAAGAACCTGGAGCCGGCCAATGTCATCGGCATCGCCAACTTCGCCGAGGAGATCGGCTGCCGGGAACTGCACCTCAAGGGCCGGGAGTACATCAACACGCACTTCAGTGAGGTTTTTGTGGACGCCCCAGCTATTGTGGCGTCTTGTGTTCGTCCGTCGCAGATCCTTGTGTTCCTCCACACAGTTGCTCGTGAAGGCCCGTTTCCCGTCCTCCCGGTGACGAAGGAGGAGGAGTTCTTCAACCTCTCCCACTGCCAGCTGCTGGACCTGATCAGCCAGGACAGCCTGAAGGTGCTGTGCGAGTCCGAGGTGTACAAGGCCTGCATCGAGTGGGTGCGCTGGGACTGTGAGAACCGAGCCCAGTACTTCCACGCCCTGCTCAACGCCGTCCACATCTACGCGCTGCCGCCCAAGTTCCTGAAGACCCAGCTGCAGGAGTGCCCCATCCTCAGCAAGGCCAACTCCTGCCGGGACTACCTGTCCAAAATCTTCCAGGAGATGGCACTGCGCAAGCCCCTGCCGCCCGCCCGGCACCGGGGAAACCAGCTCATCTACGTTGCGGGGGGTTACCTACAGCACTCCCTCTCGTCCATGGAGGCCTACGACCCCCGCACCAAGGCCTGGATCCGGCTGGCGGACATGGAGAAGCCCCAGAGTGGCCTTGGTGCCTGCGTCCTGTTCGGCCTGTTCTACACGGTCGGTGGGCGGAACAACTCCCTGCAGGAGAACACCGACTCGGACGCTCTGTACTGCTACAACCCCATGACCAACCAGTGGACCCAGCGCGCCTCCCTCAACGTGCCGCGGAACCGCGTGGGCGTGGGCGTGATCGACGGCAGCATCTACGCCGTGGGTGGGTCCCACGGCTCCACCCACCACAGCAGCGTGGAGAGGTATGACCCTGAGACCAACCAGTGGACTCTGGTGTCTCCGATGGCCGTGGCGCGGATCGGCGCGGGCGTGGCGGCGCGTGGGGGGCTGCTGTACGTGGTCGGGGGTTTCGATGGTGAGAACCGCTGGAACACTGTGGAGTGCTACCACCCTGACACTGATCGCTGGCACTACATTGCCCCCATGGCAACTGTCCGCAGCGGCGCTGGGGTGGTGTGTGTGGACAGCTATATCTACGCGGTGGGCGGGTACGATGGCTCAGTGCAGCTGAGCAGTGTGGAGCGTTACAGCGTGGCGCGGGACCACTGGGAGCCCGTTGCTCCCATGAAGAACCGCCGGAGTGCCCACGGCATCACTGTGTACCAGGGCAAGATCTACGTGTTGGGTGGTTTCAATCAGGGCGGCTTCCTGTCCAGCGTGGAGTGTTACAGCGTGGAGAGCAACGAGTGGACATTAGTGACCAACATGCCGCTGGGACGTAGCGGGTTGGGTGTGGCTGTGACCATGGAGCCCTGCCCCGGCAGCCTGccggaggagggggaggagggggatggAGGGGGCGTAACCCCGTTTTATCCCCAGCGCTGTCTGACGTTTCGACCAGCGGCCGTTGAGCTGAGCTCCCAGGAGAGCCAGGACAAGTGCCCGAGCGCTGCTGGCAGGAGCCCCGGCTCCCAGAACGCACTGCGCTCAACTCCATTACCAGTCTGA

Function

GO:

id name namespace
GO:0071379 cellular response to prostaglandin stimulus biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195080 lncRNA upstream 6627 11486492 ~ 11488514 (+) True G154879
TU195063 lncRNA upstream 29516 11449480 ~ 11465625 (+) True G154863
TU195045 lncRNA upstream 78812 11416065 ~ 11416329 (+) True G154847
TU195034 lncRNA upstream 85709 11406360 ~ 11409432 (+) False AMCG00005907
TU195024 lncRNA upstream 115852 11378780 ~ 11379289 (+) True G154831
TU195120 lncRNA downstream 106233 11613670 ~ 11614369 (+) True G154908
TU195133 lncRNA downstream 124654 11632091 ~ 11638019 (+) True G154915
TU195134 lncRNA downstream 130887 11638324 ~ 11638774 (+) True G154916
TU195135 lncRNA downstream 132249 11639686 ~ 11639926 (+) True G154917
TU195210 lncRNA downstream 399204 11906641 ~ 11912100 (+) True G154979
AMCG00005908 mRNA upstream 8758 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005906 mRNA upstream 34398 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005907 mRNA upstream 85469 11406306 ~ 11409672 (+) True AMCG00005907
AMCG00005874 mRNA upstream 151537 11339604 ~ 11343604 (+) True AMCG00005874
AMCG00005873 mRNA upstream 164020 11324831 ~ 11331121 (+) True AMCG00005873
AMCG00005866 mRNA downstream 51012 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005886 mRNA downstream 94465 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005885 mRNA downstream 175372 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005864 mRNA downstream 183384 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005883 mRNA downstream 294995 11802432 ~ 11824637 (+) True AMCG00005883
TU194985 other upstream 170067 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 409130 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 484787 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 579412 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 764932 10722332 ~ 10730209 (+) False AMCG00005834
TU195111 other downstream 94990 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 395949 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1184379 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1185323 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1189911 12697348 ~ 12698530 (+) False AMCG00005987

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032809 True 2868 mRNA 0.48 7 NC_007113.7 41835025 ~ 41861040 (-)
grasscarp (Ctenopharyngodon idella) CI01000190_00133955_00144842.mRNA True 4207 mRNA 0.45 6 CI01000190 132882 ~ 146173 (+)