RNA id: AMCG00005866



Basic Information


Item Value
RNA id AMCG00005866
length 300
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00005866
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11558449 ~ 11562627 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCTCCAGAGTCAACTCGGGAAGTTCTCACCCTGTTTTCCTCTTGCAGATCCGATGGGAGAAGAACATCACGCTAGGGGAGCCGCCCGGATTCCTGCACTCGTGGTGGTGGTATGCCAGCTGTTACTTCACAAAACAGGTTCCCCCTAGTCTGCCTCCGAGTGTGTCTGAGTTCACCTGTGCTGACCTTGTGTTCTCGGACGTTTTCACAAGCTCCATTGTATTCTGGGACTTGTACTGTGCCGCCCCAGACCGGCGGGAGACCTGCGAACATTCCAGTGAGGCCAAGGCCTTCCACGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195080 lncRNA upstream 69935 11486492 ~ 11488514 (+) True G154879
TU195063 lncRNA upstream 92824 11449480 ~ 11465625 (+) True G154863
TU195045 lncRNA upstream 142120 11416065 ~ 11416329 (+) True G154847
TU195034 lncRNA upstream 149017 11406360 ~ 11409432 (+) False AMCG00005907
TU195024 lncRNA upstream 179160 11378780 ~ 11379289 (+) True G154831
TU195120 lncRNA downstream 51043 11613670 ~ 11614369 (+) True G154908
TU195133 lncRNA downstream 69464 11632091 ~ 11638019 (+) True G154915
TU195134 lncRNA downstream 75697 11638324 ~ 11638774 (+) True G154916
TU195135 lncRNA downstream 77059 11639686 ~ 11639926 (+) True G154917
TU195210 lncRNA downstream 344014 11906641 ~ 11912100 (+) True G154979
AMCG00005865 mRNA upstream 51012 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005908 mRNA upstream 72066 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005906 mRNA upstream 97706 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005907 mRNA upstream 148777 11406306 ~ 11409672 (+) True AMCG00005907
AMCG00005874 mRNA upstream 214845 11339604 ~ 11343604 (+) True AMCG00005874
AMCG00005886 mRNA downstream 39275 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005885 mRNA downstream 120182 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005864 mRNA downstream 128194 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005883 mRNA downstream 239805 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005895 mRNA downstream 340725 11903352 ~ 11906087 (+) True AMCG00005895
TU194985 other upstream 233375 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 472438 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 548095 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 642720 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 828240 10722332 ~ 10730209 (+) False AMCG00005834
TU195111 other downstream 39800 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 340759 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1129189 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1130133 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1134721 12697348 ~ 12698530 (+) False AMCG00005987

Expression Profile