RNA id: AMCG00005868


Basic Information

Item Value
RNA id AMCG00005868
length 2113
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00005868
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10919948 ~ 10923547 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCAGAACACTAAACACCAGCACGGCGGCGCTGCTGACCCCCCTCGGAGCCCTGCTCTGAACGGGGGGGTGTTTATCGTGGGGGGGGTGAAGGCGCCGGTGACCGGCTACGTGCGCTTCCTGAATGAGCGCCGGGAGCAGCTGCGCGCCCAACACCCTGACCTGCCCTTCCCAGAGATCACCAAGAGACTGGGGGCCGAGTGGAGCCACCTCGCCCCCCCTGACAAGCAGGCGGAGCGGGAGAAGCAGCAGTACGTCCGCGAGCTGAAGGAGTACCAGCAGAGCGAGGCCTTCCGGCTCACTGCGGCCAAGATCCAGGACAAGAAGGTCAAGAGAGaaGAGCCCACATCTGTGATCATCAACGCCTCGGGGTCGGGGCAGAAGGGCGTTGAGCTGTCCGACCGCTTCTGGAAGTTCGACGTTCCCATCTTCACGGAGGAATTCCTAGACCAGAACAAAGCGCGGGAGGCGGAGCTGCGGCGGCTGCGCAAGGCCAACGTGGAGTTCGAGGAGCAGAACGCCGCGCTGCAGAAGCACATCGCCGACATGCACAACGCCAAGGAGAGGCTGGAGGCGGAGCTGGGCCAGGACGAGCGGCGCACGCAGGCCCTGCACAGACGCCTGCTCTCCATCAGACACTCCCTCACTGCCAGCCTGGCCTCCGTGCCCCTGCCAGgctcTGGAGAGACCCCCTCCCTGGGTACACTGGACTCGTACATGAGCCGCTTGTGCAGCGCCCTGGAGAGCAGCCCCCACGAGCACCGCGGCCTGGTCTCGCAGCTGCAGGACGTGCTGGCACATCTGGACAGTGACAAGCTGTGAGTGGACCATGTGGGCTCTTCCTCCtttcctcccttcctcccctCCACATCCTTCCCGTCTCCTGCCCTGAACCCGGCAGTACCATCCTGTAAACCGGAGGGAGCGTTCTCCACAGCAGTGGGAGAATTCCAGTCCGGTCCTGGTGGGTCGCAGGAGGCCTTTCTACATCAATATCTGCATTCAGACATAGGAAAGGACTTTAATTGCTTgagttaattgaataattggttcaattaactGATTTTGGAATCTTAAGAGCTCTCTGGCTCGCCAGGACTGTTTACCAAGGACACTGgtataaataacacacacatgaTGTAGACGCTGTGGTTGTTGGTGCTACTGTGTGCAGTGAGGGGAGAACAGgcgtctgtttgtgtgtttcggTGAAGGAGCCGCCCCTCTCGGCTGCCTGGCCTCGCAGCGATAACGATAATCAGTAATCAATAATCGGTAATCAGGTTGTTGTTTCGTTTTTTTGGGCGGTGGGGTGTTGTTATCGGTCCAACACTAAGATATGAAGACAggcttttaaatatacatgtaaacaatTGTATTCTTCACCACTCCCCCGCTCTCTTTTTACAGGtgcagaaaagagagagagagagagagagagagagagagattaatagaGTGGAGATGCAACTGAAAAAagacattaatttaaacatagTCTATCAGCCTTTGCTATTGGGGGTGAGTCCGGCAGGGTTCATGTGGGTCTCTTTGTCGGTCAGTCAAACCACTCTATGAAATTGTACAGTTTCTTcatttctatttattaattttatttattaattaatttagctgtTGTAGGGTGGCTTTAAGAAGccaaactaaaaatactttcctgaatatacatgaattaattaataaacaaaatcaatgaatTATTTTACAGGAATTCAGCTACACATTTTGCCTCAGATTGCTTTAacccctccacctcctcctgcCACACACACTATTTTTCTCAGATTTTTTCAATCAAGTGATTAATTCTTGACTGTTAATTGAATCATGTCATGATGTTTATGTTGCAGCTGTAGTTATTCACATTGGGTAGTAGATGGGCAGGGAGGGGATGGGGGgcgagggagagaggagggtgtATAACTAGTCTATTGATAAAGATctgcatgcatttattattctcattttttaattataataatgaccattattgtttctgttgttatttAACTTTTGTACCCTGGTGACCAAATTAAGTCATTGAGTTAGTAATACTGGAGAAATATCAGAACTGAAAGCTAACATATaaagc

Function

GO: NA

KEGG:

id description
K24650 HMG20B; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194697 lncRNA upstream 205241 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA upstream 225995 10690143 ~ 10693953 (+) True AMCG00005835
TU194696 lncRNA upstream 251687 10667998 ~ 10668261 (+) True G154583
TU194687 lncRNA upstream 343511 10575979 ~ 10576437 (+) True G154574
TU194598 lncRNA upstream 393896 10523967 ~ 10526052 (+) True G154505
TU194890 lncRNA downstream 74102 10997649 ~ 10999389 (+) True G154722
TU194957 lncRNA downstream 250848 11174395 ~ 11180237 (+) True G154775
TU194983 lncRNA downstream 396417 11319964 ~ 11361770 (+) False G154798
TU195006 lncRNA downstream 438458 11362005 ~ 11362233 (+) True G154815
TU195007 lncRNA downstream 446877 11370424 ~ 11370912 (+) True G154816
AMCG00005867 mRNA upstream 7276 10906357 ~ 10912672 (+) True AMCG00005867
AMCG00005826 mRNA upstream 33701 10882619 ~ 10886247 (+) True AMCG00005826
AMCG00005833 mRNA upstream 73090 10845536 ~ 10846858 (+) True AMCG00005833
AMCG00005834 mRNA upstream 183322 10721752 ~ 10736626 (+) True AMCG00005834
AMCG00005836 mRNA upstream 207389 10701010 ~ 10712559 (+) True AMCG00005836
AMCG00005869 mRNA downstream 6247 10929794 ~ 10962687 (+) True AMCG00005869
AMCG00005840 mRNA downstream 83251 11006798 ~ 11009861 (+) False AMCG00005840
AMCG00005813 mRNA downstream 169284 11092831 ~ 11097368 (+) True AMCG00005813
AMCG00005812 mRNA downstream 174862 11098409 ~ 11103223 (+) True AMCG00005812
AMCG00005815 mRNA downstream 216251 11139798 ~ 11140832 (+) True AMCG00005815
TU194757 other upstream 4219 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 189739 10722332 ~ 10730209 (+) False AMCG00005834
TU194591 other upstream 403558 10512504 ~ 10516390 (+) True G154499
TU194578 other upstream 448317 10470543 ~ 10471631 (+) True G154486
TU194579 other upstream 451597 10462537 ~ 10468351 (+) False AMCG00005821
TU194894 other downstream 83997 11007544 ~ 11010354 (+) True AMCG00005840
TU194931 other downstream 159614 11083161 ~ 11086011 (+) True G154756
TU194985 other downstream 396417 11319964 ~ 11325074 (+) True G154798
TU195111 other downstream 678880 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 979839 11903386 ~ 11905844 (+) False AMCG00005895

Expression Profile