RNA id: AMCG00005873


Basic Information

Item Value
RNA id AMCG00005873
length 1544
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00005873
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11324831 ~ 11331121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCACCACAACCTGGACTTGTCCCCCTGGCCTGCCCGCCCGCACCGGAGCCTCTTCGGCACCTGTCCCTGTCCGTCTGGCTGTGAGGGGAGGCCACAGGGGGGGCGGGAGGGCGGGGAGCTGCAAGACGCCCGCAGGCCACACGAAACACACgctcactctctcccccacgGACCGACCGCCCAGCCGGCCTACAGCCCAGtgttGATGGAGGAGAGTGTGTTCGAGACGTTTGAGGGGGATATGGGCTCCGAGGAGCTCTTGGAGGAGCTGCTGGCTCAAGAGGCCCAAGAGACCCAAGAGGCCCCAGACCCCTTAGCCCCACAGACCCCcacgccccccccacccagaaAGCAGACTCGCAGCCCAGATGCTCTGGATTTCTGGGAGGACGACCCGCACACGCTCGAGGTGGGGGTGTTACCGGCCTGCATCAGTGTGGTGGAGGATAGAGCAGCTGAACTGCCCGAGACCTCCATCTGGGACTACATGCTCTGGTGGAACTGGGTGGCGGAGGAAGACGAGGCGGATGAGGCAGAGAAGTCAGAGGCCGAGGCACCTTGGACAGCAGAGCCACGGAGGAGACgcagaggagaggaagaggagggcgGAGGAAGGGGCCATATCAGACGCAGGAACTTGTCAGGGAAGGGCCTCCTGAAGAGCAAAGAGGAGCatgggaagagagggaggagggaggagagagagaatgtgaaaggcaaggaggagaaggaaaaggagaagaagaaggaggggAAAGCAGATAAGAAAAGGCAGTGGGAGGAGAGGCAGAAAGAGCGCAAACTGGAACGAAAGCAGATGCCCCCGTCTGCCCACGGCAAGCTGGAGGAGGAGCGCGGGATGAAGGCTCACCGCTTCATCTTCGGAAACAAGTTCACCCGCAAGGGGAAGGCAGAGCACAGCCCCCAGAAGACAGGGAAGAAAGGGAGTGATGGGAAGAAAGTGAAAAAAGACGTCAAGAAGAAAACATAAACGACCTCAGCCTGACccgagggtggggggggtagtGAATGATCAGTACTGAAATACTGCATggcaattaattttgtttccagttgtttttttccttccgtACCATGGTTCTGCTCGGctcactgtgctgtgtgaaATGTGAGCGGAAAAAATGCGGTAAAAGTgagaaaattataaaacacaaacagactcACAACTTGCCTCAGTCATGCGGTCACACGGACACAACTCCAGCACAGCACTGGGTCAGAAATGTAACCTGTGATAACCACCTGACActcactcaatcaatcaatcaatcaatcaatcaatcataaaCAAGGCCTGATTAAACCTTCTGTCAGATTTGACGCCAATTTGAGAGGCCATTCTGACCCAGGGTGCTGCCTTTTGTCATCtgactatttttgtattttttggccAAAAACGTGTTGCTTAATCTAGTTACTATAACAATTAGCATTTCAAAACTTTGTTGGCATGTCTTTGACAGCCAGCAGCCTGTACGAGGCTTCTGATTGGAGGTACGCTTACCTGTGATGTAATTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194957 lncRNA upstream 144594 11174395 ~ 11180237 (+) True G154775
TU194890 lncRNA upstream 325442 10997649 ~ 10999389 (+) True G154722
TU194697 lncRNA upstream 610124 10690143 ~ 10714707 (+) False AMCG00005835
TU194699 lncRNA upstream 630878 10690143 ~ 10693953 (+) True AMCG00005835
TU194696 lncRNA upstream 656570 10667998 ~ 10668261 (+) True G154583
TU195006 lncRNA downstream 30884 11362005 ~ 11362233 (+) True G154815
TU195007 lncRNA downstream 39303 11370424 ~ 11370912 (+) True G154816
TU195024 lncRNA downstream 47659 11378780 ~ 11379289 (+) True G154831
TU195034 lncRNA downstream 75239 11406360 ~ 11409432 (+) False AMCG00005907
TU195045 lncRNA downstream 84944 11416065 ~ 11416329 (+) True G154847
AMCG00005853 mRNA upstream 81033 11242839 ~ 11243798 (+) True AMCG00005853
AMCG00005854 mRNA upstream 118242 11205387 ~ 11206589 (+) True AMCG00005854
AMCG00005816 mRNA upstream 152757 11171014 ~ 11172074 (+) True AMCG00005816
AMCG00005815 mRNA upstream 183999 11139798 ~ 11140832 (+) True AMCG00005815
AMCG00005812 mRNA upstream 221608 11098409 ~ 11103223 (+) True AMCG00005812
AMCG00005874 mRNA downstream 8483 11339604 ~ 11343604 (+) True AMCG00005874
AMCG00005907 mRNA downstream 75185 11406306 ~ 11409672 (+) True AMCG00005907
AMCG00005906 mRNA downstream 126377 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005908 mRNA downstream 146574 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005865 mRNA downstream 164020 11495141 ~ 11507437 (+) True AMCG00005865
TU194931 other upstream 238820 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 314477 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 409102 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 594622 10722332 ~ 10730209 (+) False AMCG00005834
TU194591 other upstream 808441 10512504 ~ 10516390 (+) True G154499
TU195111 other downstream 271306 11602427 ~ 11605275 (+) False AMCG00005886
TU195202 other downstream 572265 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1360695 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1361639 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1366227 12697348 ~ 12698530 (+) False AMCG00005987

Expression Profile