RNA id: AMCG00005875


Basic Information

Item Value
RNA id AMCG00005875
length 1448
RNA type mRNA
GC content 0.65
exon number 3
gene id AMCG00005875
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11374475 ~ 11376538 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGCAGCTCGTCTCATCTGTTCCGGGCGGAGGAGGCGTGGCGCTCTCGCTGACCCCTGCGGAGTTCACTTCCGGGGCACAAGCACGGCGTCCATAGCAACGCGCGAAGATGACTTCATCACTGTCCTACAGTGGATTGCAGTGCAAATGGCCCCGGCGCGGCTTCGGCACGTCAGACGGAGCGACTTCCGGCAGAGCCCAAAACAAACATGGCGGAGAAGCGGCGTGCAGGGGTCGTGGTGGTCGTGCCCGACTCGAAGCCCCCGAAGGCGGACACGGAGAGAGAGTTCCTGTCGCAGGCCGGGGTCGGGGTCCTGCTCAGGTCGGCGCTGCTCAAATTGCTGGAGGCCAGATCCGAGGACCCGGTCGGCTTCCTGGCGGACCATTTCGCCAACCTGGCCCAGGGGGCGGAGGATGCGGGCCGGGGCAACGGGGTGCAGCAGGCGGTGCCGGCCGAGAGACAGCAGCTCGCTCGGGCACTATGGCACCTCAGCCTCGCTCATCACTCGCAgagGTCAGCTTTCAATAACAACGTACGCCTGGCCTATGACCTTCTGGCACAGGGGGCCGGCACAGGTGGTGGGCGGCGGCGGCGTGGCGGCGGGGGGGTGCGTGGCCGGCTGTACACGGAGCTGCTGAGGCGGCTGTGCCGGGAGGGCGGGGTGTCAGAATCCACAGCCGCCCCGCTGCTGGACCGTATCCAGTGCCAGGACCACGAGGCCGTGCCTTTCGACCTGTTCCGGCAGGGCGTGCTGACCTGCGCGGTGTTCGCCGACTACGTGCGCAAGTCGGGGTCCCTGTACGCCGCCGTGGCAGGGGGGGGCAGCGGCTCCCGGGCGGAGCGTGCCCTGTGCCAGGCCGTGCTGGAGGCCCTCCGCGACGCGCTGCACACCTCCCACTCCGCCGTCGACGCTGCGCGCTTCCTGGAGGCCAGTGCCAAGATCGCCCCCTGCCGGTTGGCAGAGGCTCTGGCGCTCGCCCAGGCTTCTGCAGATACCCCACCCGGACCCCCCATGGAGCCCCAGGAGTTCCAGGACCAGGCTGCGGCCCTGTTCATCGCCAGGGTGCGCACTGTGGCTTAAGACTTGACGCTGTGCCCACAGAGGCGTAGGAGGTCTTGCCTTATTTAAATGAGCCGCCTCCACACACAGACTGGCAAGCATGCAGCAGAACGGGACAGGACAGGCCACGGTGTCGCTGTGTGTGACCCACACGCTCCCGCAGGAGGCTGCTATTCGGACTTGGGGTGCAGCCAGGCCAGGGGGTGACGGCGGGGAGACCAGCTGTGTTGGAGATGCTCATTTCAGCAAGGCCTGGCCCTGGCACCAGCCCGCTCGCCTTGGTCAAGTGCCGTCtcgtgtgtgtatgtttgtttgtttttatttagtatgctgtttttttcattttgatgttttcccttttatttattaaacatatttatcttGAA

Function

GO: NA

KEGG:

id description
K16581 TPGS1; tubulin polyglutamylase complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195009 lncRNA downstream 54491 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 90077 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 166299 11207031 ~ 11208176 (-) True G154782
TU194918 lncRNA downstream 296274 11001674 ~ 11078201 (-) True G154745
TU194891 lncRNA downstream 375093 10997777 ~ 10999382 (-) True G154723
TU195046 lncRNA upstream 39279 11415817 ~ 11416388 (-) True G154848
TU195118 lncRNA upstream 192735 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 233298 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 237136 11613674 ~ 11614383 (-) True G154909
TU195177 lncRNA upstream 313202 11689740 ~ 11690048 (-) True G154954
AMCG00005881 mRNA downstream 2159 11370260 ~ 11372316 (-) True AMCG00005881
AMCG00005880 mRNA downstream 6558 11361157 ~ 11367917 (-) True AMCG00005880
AMCG00005879 mRNA downstream 13601 11352170 ~ 11360874 (-) True AMCG00005879
AMCG00005877 mRNA downstream 35340 11336595 ~ 11339135 (-) True AMCG00005877
AMCG00005882 mRNA downstream 39521 11331772 ~ 11334954 (-) True AMCG00005882
AMCG00005910 mRNA upstream 3024 11379562 ~ 11392009 (-) True AMCG00005910
AMCG00005914 mRNA upstream 33129 11409667 ~ 11412189 (-) True AMCG00005914
AMCG00005913 mRNA upstream 41356 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005909 mRNA upstream 73548 11450086 ~ 11451494 (-) True AMCG00005909
AMCG00005911 mRNA upstream 77210 11453748 ~ 11457225 (-) True AMCG00005911
TU195020 other downstream 19842 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 35361 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 49408 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 461730 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 464043 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1295114 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1467240 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2791552 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2960353 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 3132695 14509233 ~ 14509614 (-) True G155770

Expression Profile