RNA id: TU195025


Basic Information

Item Value
RNA id TU195025
length 1203
lncRNA type sense_over
GC content 0.67
exon number 2
gene id AMCG00005875
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11374475 ~ 11376538 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGAAGCGGCGTGCAGGGGTCGTGGTGGTCGTGCCCGACTCGAAGCCCCCGAAGGCGGACACGGAGAGAGAGTTCCTGTCGCAGGCCGGGGTCGGGGTCCTGCTCAGGTCGGCGCTGCTCAAATTGCTGGAGGCCAGATCCGAGGACCCGGTCGGCTTCCTGGCGGACCATTTCGCCAACCTGGCCCAGGGGGCGGAGGATGCGGGCCGGGGCAACGGGGTGCAGCAGGCGGTGCCGGCCGAGAGACAGCAGCTCGCTCGGGCACTATGGCACCTCAGCCTCGCTCATCACTCGCAgagGTCAGCTTTCAATAACAACGTACGCCTGGCCTATGACCTTCTGGCACAGGGGGCCGGCACAGGTGGTGGGCGGCGGCGGCGTGGCGGCGGGGGGGTGCGTGGCCGGCTGTACACGGAGCTGCTGAGGCGGCTGTGCCGGGAGGGCGGGGTGTCAGAATCCACAGCCGCCCCGCTGCTGGACCGTATCCAGTGCCAGGACCACGAGGCCGTGCCTTTCGACCTGTTCCGGCAGGGCGTGCTGACCTGCGCGGTGTTCGCCGACTACGTGCGCAAGTCGGGGTCCCTGTACGCCGCCGTGGCAGGGGGGGGCAGCGGCTCCCGGGCGGAGCGTGCCCTGTGCCAGGCCGTGCTGGAGGCCCTCCGCGACGCGCTGCACACCTCCCACTCCGCCGTCGACGCTGCGCGCTTCCTGGAGGCCAGTGCCAAGATCGCCCCCTGCCGGTTGGCAGAGGCTCTGGCGCTCGCCCAGGCTTCTGCAGATACCCCACCCGGACCCCCCATGGAGCCCCAGGAGTTCCAGGACCAGGCTGCGGCCCTGTTCATCGCCAGGGTGCGCACTGTGGCTTAAGACTTGACGCTGTGCCCACAGAGGCGTAGGAGGTCTTGCCTTATTTAAATGAGCCGCCTCCACACACAGACTGGCAAGCATGCAGCAGAACGGGACAGGACAGGCCACGGTGTCGCTGTGTGTGACCCACACGCTCCCGCAGGAGGCTGCTATTCGGACTTGGGGTGCAGCCAGGCCAGGGGGTGACGGCGGGGAGACCAGCTGTGTTGGAGATGCTCATTTCAGCAAGGCCTGGCCCTGGCACCAGCCCGCTCGCCTTGGTCAAGTGCCGTCtcgtgtgtgtatgtttgtttgtttttatttagtatgctgtttttttcattttgatgttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195009 lncRNA downstream 54522 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 90108 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 166330 11207031 ~ 11208176 (-) True G154782
TU194918 lncRNA downstream 296305 11001674 ~ 11078201 (-) True G154745
TU194891 lncRNA downstream 375124 10997777 ~ 10999382 (-) True G154723
TU195046 lncRNA upstream 39612 11415817 ~ 11416388 (-) True G154848
TU195118 lncRNA upstream 193068 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 233631 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 237469 11613674 ~ 11614383 (-) True G154909
TU195177 lncRNA upstream 313535 11689740 ~ 11690048 (-) True G154954
AMCG00005881 mRNA downstream 2190 11370260 ~ 11372316 (-) True AMCG00005881
AMCG00005880 mRNA downstream 6589 11361157 ~ 11367917 (-) True AMCG00005880
AMCG00005879 mRNA downstream 13632 11352170 ~ 11360874 (-) True AMCG00005879
AMCG00005877 mRNA downstream 35371 11336595 ~ 11339135 (-) True AMCG00005877
AMCG00005882 mRNA downstream 39552 11331772 ~ 11334954 (-) True AMCG00005882
AMCG00005910 mRNA upstream 3357 11379562 ~ 11392009 (-) True AMCG00005910
AMCG00005914 mRNA upstream 33462 11409667 ~ 11412189 (-) True AMCG00005914
AMCG00005913 mRNA upstream 41689 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005909 mRNA upstream 73881 11450086 ~ 11451494 (-) True AMCG00005909
AMCG00005911 mRNA upstream 77543 11453748 ~ 11457225 (-) True AMCG00005911
TU195020 other downstream 19873 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 35392 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 49439 11320737 ~ 11325067 (-) False AMCG00005876
TU194822 other downstream 461761 10843841 ~ 10912745 (-) False G154677
TU194815 other downstream 461761 10910516 ~ 10912745 (-) True G154677
TU195574 other upstream 1295447 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1467573 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2791885 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2960686 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 3133028 14509233 ~ 14509614 (-) True G155770

Expression Profile