RNA id: AMCG00005876


Basic Information

Item Value
RNA id AMCG00005876
length 1684
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00005876
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11320260 ~ 11325068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGACCATTCTGCTCTAGCCCGGAGTCTGAGAGATCTGCGTGTGCAGACATAGGCCGGATGGTTAAATCTAACCTACAGACGATATTAAATAGCCACTGTTTTGTAAgagaaaaggaaggaaataTAACCAAGATGCCCGTCATCAGCCTGACCAGTAATATCAACGAAAGCTTTTGTACGAGGAGCATTAACTTCTGTAAACACGACccttttattctctctctccctgcagtcCCCGGCGTTGTGCCCGTTGCTGTAGTAACCCGTGTCCGGGGCCTCGGTGGTGCTCCTGATGCCCCTCTCCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATGACCAGAGGGATCGCAATCTTTCAGCTAAATTATTCCACGCGGATGCTCGGTTGTTGGTGCATGAGGAACCCCCCCCCTCGGTGGGGTGCCGCGTGCGTTTCCTGCAATTCAAGCCCCGGCGTGCGGAGGGGCAGCAGGGTGCTTGGCGGGGGGCGCTGCGTGGGGGCAGCCTGTACATCGAGATTCCCCCCGGCACCCTGCCTGAGGGCAGCAAGGACAGCTTCGCCCTGCTGCTGGAATTTGCGGAGGAGCAGCTGCAGGTGGATCATGTCTTCATCTGTTTCCACAAGAACCGCGACGACCGAGCCCCATTGCTGCGCACCTTCAGTTTCCTGGGCTTTGAGATTGTGAGACCTGGGCACCCCCTCGTCCCCCCCAGACCCGACGCTGTCTTCATGGCTTACACGATCGAGAGAGACTCCTCGGACGACGAgtaacaccaccaccaccacccccccccccttcacacTCGCACCCTCTGTGGGACCCGTCTTGGTTTCCGCTTCCCTGTCCCTCACCCATCTGCCCGCCACCTGTTCATCTCTGAAGATGTAAAATTTATGGTTGAAATCCCCATGCAGAAATGTTCTAGTTTCCTTCTGTTCCAGACCCTCGtgcatcttctctctctccctcacatgCATCTgtttagattgttttattttgttcccagTCCTGTGAATGGGTGCATGCCTGCTCTCTGGTGGTTGAAATATGAATACTGAAAACACtttttacattgatttcttGTTGATCTGgtcccatttatttttctgattacAATCTGCATGTTGTAACAGTGTGCAACAATAAACTGCTCACCCTACTGTGCCCCGGCTGCTGAGATGTTTTGTGTGCATTGCTGTGCAACTGCAGTCTGAGCTGCACCATCTTATCTGTACCTCTTCCATGACCTTAGTTCAATGTGAAATTACCTCCTATATAGACACTCATACCTGCATATATTGGCCTTTAACAATCCAATTTAACTTTGCACTTGGACCTATTTGGGCCTGGTTGTACTTAGACATGCAAGTGTGTAATATGGACGTTCtaaggagtacaggtatgtgacacctatcaatGGTTGGTCATGATTAGAcaactatattgtttttttacacaaaaacaaattgctttttttgaaatgttgacttttGTTCTCCATTCTCCATATATGAAATCTTTTTTTGGAAAAAATGCCACTCCTATTGAAATTTGGAAAAGTTGTTGGATGAAAATCCCATAAggaatgaaggaataatgtgcatttgaaaaaaaactagCCTAGGTGTAAACGTTCAGGGAATTTGTACCACAGAATACTAACAAGTGGCCATTTCTGC

Function

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0004857 enzyme inhibitor activity molecular_function

KEGG:

id description
K16548 OAZ1; ornithine decarboxylase antizyme 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195009 lncRNA downstream 276 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 35862 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 112084 11207031 ~ 11208176 (-) True G154782
TU194918 lncRNA downstream 242059 11001674 ~ 11078201 (-) True G154745
TU194891 lncRNA downstream 320878 10997777 ~ 10999382 (-) True G154723
TU195025 lncRNA upstream 49438 11374506 ~ 11376205 (-) False AMCG00005875
TU195046 lncRNA upstream 90749 11415817 ~ 11416388 (-) True G154848
TU195118 lncRNA upstream 244205 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 284768 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 288606 11613674 ~ 11614383 (-) True G154909
AMCG00005878 mRNA downstream 13590 11299612 ~ 11306670 (-) True AMCG00005878
AMCG00005855 mRNA downstream 53850 11263074 ~ 11266410 (-) True AMCG00005855
AMCG00005852 mRNA downstream 129955 11180934 ~ 11190305 (-) True AMCG00005852
AMCG00005814 mRNA downstream 226718 11082498 ~ 11093542 (-) True AMCG00005814
AMCG00005845 mRNA downstream 242646 11064028 ~ 11077614 (-) True AMCG00005845
AMCG00005882 mRNA upstream 6704 11331772 ~ 11334954 (-) True AMCG00005882
AMCG00005877 mRNA upstream 11527 11336595 ~ 11339135 (-) True AMCG00005877
AMCG00005879 mRNA upstream 27102 11352170 ~ 11360874 (-) True AMCG00005879
AMCG00005880 mRNA upstream 36089 11361157 ~ 11367917 (-) True AMCG00005880
AMCG00005881 mRNA upstream 45192 11370260 ~ 11372316 (-) True AMCG00005881
TU194822 other downstream 407515 10843841 ~ 10912745 (-) False G154677
TU194815 other downstream 407515 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 409828 10906295 ~ 10910432 (-) False G154677
TU194621 other downstream 967478 10315380 ~ 10352782 (-) False AMCG00005850
TU195016 other upstream 11706 11336774 ~ 11339114 (-) False AMCG00005877
TU195020 other upstream 24177 11349245 ~ 11354633 (-) False AMCG00005879
TU195574 other upstream 1346584 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1518710 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2843022 14168090 ~ 14171607 (-) False AMCG00005997

Expression Profile