RNA id: TU195016


Basic Information

Item Value
RNA id TU195016
length 818
RNA type TUCP
GC content 0.60
exon number 8
gene id AMCG00005877
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11336595 ~ 11339135 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGGCGCATCTTGAGTCAGGGTCGAAGCGTGTGTTCAACGTAAAGGGCCTGTGCAACAGAGTGAGCGAGACTGCGGGACTGTTGTGTCTTGTCTGTGAGTCCGTCAGCCTGCAGAGATGGATTTCCAGCACCGGCGCGAGCGGCTACGGCAGCTGGCCCTGGAGACTATCGACATCAACAAGGACCCCTACTTCATGAAGAACCACCTGGGGTCCTACGAGTGTAAACTGTGCCTGACGCTACACAACAACGAGGGCAGCTATTTAGCTCACACTCAGGGGAAGAAGCATCAGACCAACCTAGCGCGGCGAGCGGCCAAAGAAGCGAAGGAGGCTCCGGCCCAGCCCGCCCCAGAGAAGGTGAAGGTAGAGGTGAAGAAGTTTGTGAAGATTGGGAGGCCGGGGTACAAAGTGACGAAGCAGAGAGACCCAGACACTGGTCAGCAGAGCCTGCTCTTCCAGATTGATTACCCCGAGGTGGCAGAGGCCATCGCCCCACGCCATCGCTTCATGTCTGCATACGAGCAGCGCATCGAGCCGCCCGACCGGCGCTGGCAGTACCTGCTGCTGGCAGCCGAGCCCTACGAGACCATCGCCTTCAAGGTGCCCAGCAGGGAGATCGACAAGGGCGAGAATCGGTTCTGGACACACTGGAATAAAGAGACAAAGCAGTTCTTCCTGCAATTCCACTTTAAGATGGAGAAGatcctgcccccccccagcgGCCCTATGCCCCCGATGGGAGTGAAGAGACCCCCCCCTCTGATGGGAGGGATGGCCCCCAGGCCACCCCCAAATGACCCcatgcccccccctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195009 lncRNA downstream 16790 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 52376 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 128598 11207031 ~ 11208176 (-) True G154782
TU194918 lncRNA downstream 258573 11001674 ~ 11078201 (-) True G154745
TU194891 lncRNA downstream 337392 10997777 ~ 10999382 (-) True G154723
TU195025 lncRNA upstream 35392 11374506 ~ 11376205 (-) False AMCG00005875
TU195046 lncRNA upstream 76703 11415817 ~ 11416388 (-) True G154848
TU195118 lncRNA upstream 230159 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 270722 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 274560 11613674 ~ 11614383 (-) True G154909
AMCG00005882 mRNA downstream 1820 11331772 ~ 11334954 (-) True AMCG00005882
AMCG00005876 mRNA downstream 11706 11320260 ~ 11325068 (-) True AMCG00005876
AMCG00005878 mRNA downstream 30104 11299612 ~ 11306670 (-) True AMCG00005878
AMCG00005855 mRNA downstream 70364 11263074 ~ 11266410 (-) True AMCG00005855
AMCG00005852 mRNA downstream 146469 11180934 ~ 11190305 (-) True AMCG00005852
AMCG00005879 mRNA upstream 13056 11352170 ~ 11360874 (-) True AMCG00005879
AMCG00005880 mRNA upstream 22043 11361157 ~ 11367917 (-) True AMCG00005880
AMCG00005881 mRNA upstream 31146 11370260 ~ 11372316 (-) True AMCG00005881
AMCG00005875 mRNA upstream 35361 11374475 ~ 11376538 (-) True AMCG00005875
AMCG00005910 mRNA upstream 40448 11379562 ~ 11392009 (-) True AMCG00005910
TU195013 other downstream 11707 11320737 ~ 11325067 (-) False AMCG00005876
TU194822 other downstream 424029 10843841 ~ 10912745 (-) False G154677
TU194815 other downstream 424029 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 426342 10906295 ~ 10910432 (-) False G154677
TU194621 other downstream 983992 10315380 ~ 10352782 (-) False AMCG00005850
TU195020 other upstream 10131 11349245 ~ 11354633 (-) False AMCG00005879
TU195574 other upstream 1332538 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1504664 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2828976 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2997777 14336891 ~ 14340663 (-) True AMCG00006013

Expression Profile