RNA id: TU195020


Basic Information

Item Value
RNA id TU195020
length 2887
RNA type TUCP
GC content 0.54
exon number 2
gene id AMCG00005879
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11349245 ~ 11360874 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGTGGGTGCGGGGATTCTTCCTGTGCCCCCCACTCCGGTGGGCCACCCTACCTGGGTCACAACCCCTTCCTCGGCCAGCCTCCCTCAGAGACTCCCTCAGGCCGTGGCGGGCCAGGGACGACCgagaagcagcagcagatgcAGCAGGGGTCGAAGGTCAAGTGCCGGGACTGGGAGCTGAAGGTCAGCAGCTGCGGGGGGGGCGGCCTGGCCAGCCAGAACCTCTTCATCACGGCGGCGACCGGAGGGATCCTCAGCGCCAAGTCCGGCAGCCCGGTGGCGGTGTCCTCGGGCTCGGGCAGCCTGGTGGGTTCCTACTTGGGGCCGCAGTTCCAGCTGGGGGGGGCCTCCTCCATGCTGCAGTCACTGTTCGGGACCCAGCCCCCCGCCAGCGTCCCCACCTCCTCCGcccccaccatcaccaccacccaCGGAGGCCCACGCCTGGTGAACGGGCATGGAGCCATTGGGCCCTTCTCTAGCACCGGCCTGGCTGGGGGGGCCGCAGGAGGTAACTAAAGAATTCTACCTCAACCCTATGTGACCTATGCAAAGGAACGGTGTGGACCAAGACACTGTCTTCACACTGACTGGTGCTCGCGTCTCCGCAGGGAATCTCTGCGATCGGCATGGGTATAGAATCAACACACCtgcagctacacacacacagacatatacgcacacacacacgcacacacacacttggacTCTGATGCACACTTGCGCAGCACTGTGCCCAGGGGTCAGAGGTAGTCCAGCAccttttgtgtatgtgttttgggGGAGAGAAGGTTTGAAATCTATTCCAGGTCTTTGATCCAGCCTGGATGTCTCCATATGGGTCGCAGCAAAAGCCCGGAGGTTTGCAGTCAGTGGCACACTGAGGGTGCGGTAGCTTCAGAGAGGGAAGGGCTAGGGCCAGGGTGGGGTTAGTACCTTAAATCGACTGCCTTTGTTTAACacgccctggtcctgagagccCCAGCCATTCAGGTTTCGCATTGCATCTCAAATCACTTCAGTCTGGAGGGACTCGGGGAAAGTCAGGGGTCGGTGGAGCCGCCACAGAGCTCGTCTGGAGGGAGGCAGAGGATAAAAGCCCTGATCAGCTCCTCAGGCAGCCTGAGGCTGTCGGGCGTGGAGTTCAGCCGAGCACACTACACACGCGGCACCAGAGTTTAGACTGCGGCCCAGTGCGGTGTGCTCCCCTCAGCTGGACCTCCAGGCTGAGCCGCCGTCGTCGTGCTTCTGCTCCATCTCCTGACGTCTTGATTGTTATTCAGTCTCTAAACTGGTTAATATTTCCCCAGCTGGGAGGTGGAAAGGCCTATATCTACCCTGACTTATTATACCTACCAgactttttgtttaattgttttccgGACCTTAATTTAACACCCTGGGCCCTCAATACTTCCAGCCGGTGTTTCTGTGAGGGTACCAAAGTGCGCGAGTCAACAGAACCCCCCCGGCGATTCACCAGCAAGGGCAGCGATCGATCTTCCATCAGCGGCTGTGGCCTGAAATGTGGGATACCATTTCTAATACAGCCCCAACACTGTCCCTCTTGAGGCTTTAGGGTTTGTTTTAATagtaatataaagtatttttggGGTGTTGAATTGCCGGTTTATGCCCTGTTGTTGGTCTCCTCTCAGGGCCTTCTGTGCTGAACCCTgcctgtgtgcgtgtttgtttattaatgccTTTATTTTCTGTGGTCTCGGACAGTTTCTGGTCTGTTGCTTTGGCTGCGGGAGTGTGTTTCTTGGCTCATCATTGTTCTGCAAATGTGTATCCAGTATCAACTAGATATGAACTTTCCCTCGGGCAAAGTCAGCTGTTATtaaattatgattgtttttacATCAAGAATCGCAAGACGGCGTTGGTTATAGAGATTTTGTGGGAGTAGGGCGGGTGTGAAGGGGTAAGGATGTATTGATCATGTAGAAAGGGATCATGGATTTCCTGTTGAAACACTGACCCCTACTGGTCACAGTGGGGACTTCGCTTACTTCAGGGCATGAAAGCGAGCAGACGCAGGCAGGAGTGTGGGAACCTGGAGATGCTTAATCGCTCAGTCTTTTCTCATCTCTCCCACTCGTTCTGTAATTGTGTCCCTCCCACTTTTGAGTCAACCTccacaaaatcacacacacaaggtGCTGGCCTCTGCAGTTAattgcacactcacacacgcatgCTGACAGAGACGCGCCTGTTGTGTAAAGTCTCCCGCCAGCACGTGTCCCTTTACAACCCGGCTGAGTGGAACATGAGGTTTTCCATTGTGTCTCTGTGCAGCAGCGCCGCAGGAACTGTACACCAGAAGGACATTCACTAGGgaatatgggggggggggtggcagcggcagctgtgcccgGCAAACGAGGGCAAGTGATAGGCCTCGGCTCGTTAGTCCACACCACCCTTGCTGCCTTCCTGTTCTGTCCGCGCCAGCACTTGGTTCCAATAAGctccttaattatttaattgcgTGTTGCTGTGCtacttttttctgtaaataaataattagggTGTCCATTACCTATCCTGCGTTTGGCTTCATTGCAATGGCACGTGGCTGAACACCCAACCCCCCACTTACCCCACTGTACAGCAgtcatgtgtgtttttcctgtaaATCGTGGACATAGCTCTGTGAAATAAATCTATACATCACTGTATATCCCTGGATTGTGCTGCTCGTGTAGATGTGTCGAGGTTCCTCTATTAAAGCCCAACGAGAACCATTGTAGCCACGCCAGGGACGGTGAAATGGGCTCTACTGTGTTGAACTGTCCAGTCCAGTTGGCTACATTGTATACTgctcaatacacacacacacagctgaccACAGCAGCTATGCGCAGGTACAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195009 lncRNA downstream 29261 11309698 ~ 11319984 (-) True G154817
TU194973 lncRNA downstream 64847 11284128 ~ 11284398 (-) True G154791
TU194964 lncRNA downstream 141069 11207031 ~ 11208176 (-) True G154782
TU194918 lncRNA downstream 271044 11001674 ~ 11078201 (-) True G154745
TU194891 lncRNA downstream 349863 10997777 ~ 10999382 (-) True G154723
TU195025 lncRNA upstream 19873 11374506 ~ 11376205 (-) False AMCG00005875
TU195046 lncRNA upstream 61184 11415817 ~ 11416388 (-) True G154848
TU195118 lncRNA upstream 214640 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA upstream 255203 11609836 ~ 11613611 (-) True G154906
TU195122 lncRNA upstream 259041 11613674 ~ 11614383 (-) True G154909
AMCG00005877 mRNA downstream 10110 11336595 ~ 11339135 (-) True AMCG00005877
AMCG00005882 mRNA downstream 14291 11331772 ~ 11334954 (-) True AMCG00005882
AMCG00005876 mRNA downstream 24177 11320260 ~ 11325068 (-) True AMCG00005876
AMCG00005878 mRNA downstream 42575 11299612 ~ 11306670 (-) True AMCG00005878
AMCG00005855 mRNA downstream 82835 11263074 ~ 11266410 (-) True AMCG00005855
AMCG00005880 mRNA upstream 6524 11361157 ~ 11367917 (-) True AMCG00005880
AMCG00005881 mRNA upstream 15627 11370260 ~ 11372316 (-) True AMCG00005881
AMCG00005875 mRNA upstream 19842 11374475 ~ 11376538 (-) True AMCG00005875
AMCG00005910 mRNA upstream 24929 11379562 ~ 11392009 (-) True AMCG00005910
AMCG00005914 mRNA upstream 55034 11409667 ~ 11412189 (-) True AMCG00005914
TU195016 other downstream 10131 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 24178 11320737 ~ 11325067 (-) False AMCG00005876
TU194822 other downstream 436500 10843841 ~ 10912745 (-) False G154677
TU194815 other downstream 436500 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 438813 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1317019 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1489145 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2813457 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2982258 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 3154600 14509233 ~ 14509614 (-) True G155770

Expression Profile