RNA id: AMCG00005884


Basic Information

Item Value
RNA id AMCG00005884
length 2447
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00005884
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11838001 ~ 11863038 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGGATCTGGACACTTTGTCGGGACTCCTTCCCACTGGAGTTTCAGCACATCACGTCACTCCACTACTGGGACACCACTGTTGGGCACAGAGGGGTGGGAAAGGGGAAGGTGGGCAGCAAGAAAAACATAGAACAACCATCCTCGCAGGAGCTCTACCTGTCTGTGCACTGCACctccacccccccgcccccaaggagGGAAAACACAATGGTGTCCCAAAAGGAGCTTTCGAAAGGCTGCGGCGCCGCGGCGCAGTCGAGGATCCCCATTGGAACTGGATGGATTGGCATGGGGAGAAGCGGACCTCAAAACCTGGCTAAGCGGCAGCTTTGGACCTCCGTTTCGTTTATGATGGTATTCTTCTCACTGTGGCCTAGAGCAGCACATTGCCAGCAGTGCCGTATCCAGCGCTGCAATGCGGAGTACGTTGGCGCCACCTCTCCGTCCAGCAGCCTGCAGGACGAGGCCCCGGTGACGGACGTGGACTATTGCATCGCACTGAGGGCCTACTCTCTATGCACCCGGCGTACCGCGCGCAGCTGTCGCGGTGACCTGGTCTACCACTCCGCCGTCTTCCGCATCAAGGAGCTCTTCTCCCAGCACAACTGCTCCAGCGACGGCCCCACCTCCCCGGCCAACAAGGCCCAGGGAACCTCGCACCCGGTCGTGTCGGAACTGTGCGACTACGAGAGCAGGGCGCTGGCCTCGGGCGCTGCCGGCTCGCAGAAGAAGTACGCTCACTGTGGATTATTTGGGGACCCCCACTTGCGGACGTTCCGGGATGAATTTCAGACTTGTAAAGTGGAGGGTGCCTGGCCCCTCATCGACAACCGCTTCCTGTCCGTGCAGGTCACCAATGTGCCGGTCGTCCAGGGATCCAGCGCAACGGCAACCAGCAAGATCACTGTGATCTTCAAGTCCTTCCGGGGCTGCACAGAGCAGAAGGTGTACCAGGCCACCACAGAGGACCTGCCCTCCGCCTTCCTGGACGGGACGCGCAGCGGGGGCGACGGGGGCAGTCTGTGGATCGTGGAGCGGGCTGGCGGCCAGCAGCCCTCGGTGCAGGTGGAGATCCAGGCGCGCTACATCGGCACGTCCATCATCGTGCGGCAGGTGGGGCGCTACCTCACCTTCGCCATCCGCGTCCCGGAGGACACCCTCAACTTCTCCGAGGAGAGTGGGGGGCTGCAGCTCTGCCTGCATGGCTGCCCCCGCAGCGAGCTCATCAAGGAGCACACGCTAAGCCGGCAGAACCTCAGCCCGAGGCTGCAGGGGGCCGGGGGTGCGGCGTCCGgcctccccctgcccccccgccaGGCCTACACTGTGGACCGCGCCACTGCCAAGTGCCGGGAGATCCTGCAAGTGGAGGACGTGTACTTTCAGTCGTGTGTCTTCGACCTGCTCACCACTGGGGACCCCGAGTTCTCCATGGCCGCCTACGGGGCTCTGGAGGACCTCAAGGCCCTGCCGCCCAGCAAACTGAAACAGAACTCGCCCAGGGTGCCGCGCGTCAACAACTCCACCCCCCCCACGCTGGGCCCCAGCTCCCGCACAGCCCAGTTGGTCATGCTGGCCCTGGCAGTGCTGCTGCTTTTGTAGAAAGtgaattacaaagaaaaaagggaagtaTTTTCAGCTTGAGGAAGGAGCCCAAGCAAATCTGTGGCTAGTCCTGTTTCAGAGCAGCTCCAGTCAGCTGTGGCGCCGCTCCCATTCATTCTCTCACCCTCCCCTTACAAGCCTCCCTTCAGAGTCCTAACCCACAAGGACGTTTCCAGACACTGAGAGACGCAGTCCTCCTAACGTTTTGATTGTTAAAGACGTTCACTTTAAGAGGATTTCAGAACGGAACCTTTTAGATCTTTTGTGCAGAGAGGGGGAATCAGGGCAACAGAAAGCAAAGAACTAACCAAGATGGGGTTAAATGCGagagatggggtggggggggatgctGGGAGACGTGTGAAGGCAGCTAAACAGAgatttgtgtaaatatatactttaaactGAATAATGTGCACGCAGCTGCATTGAGTGAGGGGTCCGGGGCGGGAGTGTGCGTGATATTGACAAAGCTGTGTCTTCCACGATTCCAGGTGTGGCCATACACTGCAGCTCATCCTGGCAGCTCCTTCGTTGCACATTGTATTGTAACCTTTTTGCACCCTCTCATCTAGTAATCATGACACACACTTAGAAAATCTGTGTATCTGAAATGGGTTCCAACAACTGTATGAAAATACTACCTATCCACGTCGCTTTTTAAAGACTTTCATTCTTGTAGTTGTCAGTTCTGTAGAGTCTGGTTTCAGCGTGGTAGTAGCATGGTAATAAAACCGGCACATGGAACTCTTTTTCTTACACTCCTTCCTCAAGCCTGCCTACTCCTGgtggtattttttaataagataaagaaacaaatcctctatataataata

Function

GO: NA

KEGG:

id description
K23096 RGMA; repulsive guidance molecule A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195177 lncRNA downstream 147953 11689740 ~ 11690048 (-) True G154954
TU195122 lncRNA downstream 223618 11613674 ~ 11614383 (-) True G154909
TU195118 lncRNA downstream 224390 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA downstream 224390 11609836 ~ 11613611 (-) True G154906
TU195046 lncRNA downstream 421613 11415817 ~ 11416388 (-) True G154848
TU195245 lncRNA upstream 69074 11932112 ~ 11932947 (-) True G155003
TU195312 lncRNA upstream 140102 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA upstream 144430 12007468 ~ 12017366 (-) True G155059
TU195331 lncRNA upstream 262123 12125161 ~ 12126128 (-) True G155073
TU195473 lncRNA upstream 584482 12447520 ~ 12447719 (-) True G155183
AMCG00005889 mRNA downstream 157179 11675135 ~ 11680822 (-) True AMCG00005889
AMCG00005891 mRNA downstream 163649 11670353 ~ 11674352 (-) True AMCG00005891
AMCG00005888 mRNA downstream 188679 11637138 ~ 11649322 (-) True AMCG00005888
AMCG00005887 mRNA downstream 210069 11622428 ~ 11627932 (-) True AMCG00005887
AMCG00005890 mRNA downstream 221188 11615392 ~ 11616813 (-) True AMCG00005890
AMCG00005900 mRNA upstream 33980 11897018 ~ 11902390 (-) True AMCG00005900
AMCG00005899 mRNA upstream 43528 11906566 ~ 11918065 (-) True AMCG00005899
AMCG00005901 mRNA upstream 55750 11918788 ~ 11930850 (-) True AMCG00005901
AMCG00005905 mRNA upstream 121625 11984663 ~ 11993731 (-) True AMCG00005905
AMCG00005893 mRNA upstream 224005 12087043 ~ 12119953 (-) True AMCG00005893
TU195020 other downstream 483368 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 498887 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 512934 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 925256 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 927569 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 808614 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 980740 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2305052 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2473853 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2646195 14509233 ~ 14509614 (-) True G155770

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040468 True 2052 mRNA 0.48 3 NC_007133.7 19640309 ~ 19646421 (+)
grasscarp (Ctenopharyngodon idella) CI01000030_03253246_03261669.mRNA True 1780 mRNA 0.53 5 CI01000030 3253246 ~ 3261943 (+)