RNA id: AMCG00005885


Basic Information

Item Value
RNA id AMCG00005885
length 1670
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00005885
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11682809 ~ 11686775 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATTTCCGCCAATGCCAGAGATAAACGCTATATCCCCAAGACATGTTAACCGTGTGATACGGGTTTATTCTTCCTAATTATACAATGCCACTACTGCATTCGTATAGTGTTTGTATTAATGCATGCGCAGTTCAGGTTATAAAGACGTTCTGTGACGGAATCGCAAAGCTGAACGCAACTAGATTGTACGTAAACGGAGAGACAAAGGAAATGTCTGAAAGCTACGATCACCTTAAATGTGTTCAAAGCCAACTCTATCACTAGTGCGCTGTACAACCCCCCGCCAGAGTAGGGAGACCCTGAGGCGGCCACCTTACATCCATACTTCTGTCACTTTCTCATCAAAGTTTGCAGCCATTATTCTGTGAGGGATCGCTAAATAGTTCGCTTCCGCCCCGTGTCCCGCTAGAGCTTCCGTAGTTAACAGGTGGCACGTAGTGGAACAGGAAGAAAAGCGCCGAATAAAGCTCGTCGACAGGAGAGCAACATAAAGCGGCAAACGAAGCTTCCAAAATGCCAAAATCCAGCGAGGACTCTGTGTCTAACTCGgacagccaatcagatgccGAAGAGGATAACAAGCAGGCAAAGAACAAGAAGCCACCTGCAGAAAAGCCCTCCCCAGcccaaaagaaacagaaaactggGGAGGGCAGCTCACGCCCAGTCCCGGACAGAGAGCCCCCCAAGAAGAAGGCTGGAGCGGGGGGGGGGAACCAGGACGGGGAAGAAGAGAACATGATCCAGATCGGGAAGATGAGGTACGTGCGCGTGTCGCTGTTCAAAAGGAGGACCTTCATCGATATCCGGGAGTTCTACACGGACAGCTCGGGCAGCACCAAGCCTGGGAGAAAAGGCATTTCATTAACCACAGAAGAATGGAGCCAGCTGAAGGAGATCGTCCCAGAGATAGACGCAGCCATTCGCAAACTGTAAATCTCCCAGTGGCCCAgttctcttgtttttgttgtttttcatgttgaGGTCCAGGGATGgcagattttcctttttttattatagaaAGCTGATTTAGATTTCCTGtttccagttttatttaatgCTCCTGTTCTTAAGTGATCCTCTCCCCTATGTGTCAGCCCAGGGCCCAGATAATCTGATTTGAAAATGAACGAATTAAAATGATGGTGAAATAATGATATTGATAAGTTTCAGAAGCAGCACAAGTCTGTTTTAAAGAGGAGACTtaagcattttctgttttgattttgtcttgtTAAGTGTTCTGTAAATAGTTCAATTAATTTGTGGTGAcccaaaaaggaaaatatgatgtcaaataaatgaaaagtgcATTGGGTAGTGCATGCTTGGTTTTTTCTCCAACATTTATCAATCCCTATTTTTGTCTTGAGCTgtgatttaagaaacataagataATGAAAGCTTGGTAGCATTGTGGTATTTGACTTGAAGCACTTAAAGTATTATGAAGAGGTACAGAagaagtataataaaatataatggtaATAAGCGATAATAAAATGGTGATAGTTTGTAACAAAACAGGCATTTTTTGGATAGCTATAGCTAAAACAGGAGCTGCTCACTAATGCATATGCTTTGTGGCTTccaaaactaatacaaaaaatacatcactTTAATTGTTTGATGCAATTTGTTGATCTGAAAAAAACTATATGTAACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195135 lncRNA upstream 42883 11639686 ~ 11639926 (+) True G154917
TU195134 lncRNA upstream 44035 11638324 ~ 11638774 (+) True G154916
TU195133 lncRNA upstream 44790 11632091 ~ 11638019 (+) True G154915
TU195120 lncRNA upstream 68440 11613670 ~ 11614369 (+) True G154908
TU195080 lncRNA upstream 194295 11486492 ~ 11488514 (+) True G154879
TU195210 lncRNA downstream 219866 11906641 ~ 11912100 (+) True G154979
TU195263 lncRNA downstream 284049 11970824 ~ 12207954 (+) True G155017
TU195266 lncRNA downstream 297888 11984663 ~ 11986924 (+) True G155018
TU195305 lncRNA downstream 514961 12201736 ~ 12203472 (+) True G155053
TU195472 lncRNA downstream 760705 12447480 ~ 12447684 (+) True G155182
AMCG00005886 mRNA upstream 72658 11601902 ~ 11610151 (+) True AMCG00005886
AMCG00005866 mRNA upstream 120182 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005865 mRNA upstream 175372 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005908 mRNA upstream 196426 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005906 mRNA upstream 222066 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005864 mRNA downstream 4046 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005883 mRNA downstream 115657 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005895 mRNA downstream 216577 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005896 mRNA downstream 245409 11932184 ~ 11935207 (+) True AMCG00005896
AMCG00005898 mRNA downstream 249074 11935849 ~ 11938386 (+) True AMCG00005898
TU195111 other upstream 77534 11602427 ~ 11605275 (+) False AMCG00005886
TU194985 other upstream 357735 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 596798 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 672455 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 767080 10913397 ~ 10915729 (+) True G154636
TU195202 other downstream 216611 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1005041 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1005985 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1010573 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 1019716 12706491 ~ 12707437 (+) False AMCG00005987

Expression Profile