RNA id: TU195111



Basic Information


Item Value
RNA id TU195111
length 666
RNA type TUCP
GC content 0.51
exon number 7
gene id AMCG00005886
representative False

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11601902 ~ 11610151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttttttattttcattacagcCATTCATGTCCCCGCGGTACCCCGGTGGGCCCCGCCCCTCACTCCGAATGCCAAATCAGccTCCAGTCGGTGTCCCGGGGTCACAGCCGCTCCTGCCAAACAGCCTAGACCCCACGAGACCACAGGGACACCCTAACATGGGCGGCCCGATGAGGATGAACCCCCCGCGGGGCATGGCAGGCATGGGACCCCAGAACTACGGTGGCGGAATGAGGCCCCCCCCTAACTCCTTAGGAGGCCCAGGCATGCCCGGCATGAACATgggTCCTGGAGGCCGAGGTCCTTGGCCCAACCCCAACGCTAATTCAATAGCGTACTCCTCGTCTTCTCCAGGGAACTACGTGGGGCCACCAGGGGGCGGAGGGCCACCAGGAACTCCCATCATGCCTAGCCCAGGAGGTGCGTCACCTTAATCTGTCCCTACACAACCCTTACTCTCAACCTCAGTTCCTGCTGCACAGAAACcccagatttttttgtttttttatgtttttgatacacacaggaaaaaataaattgtattcaaCTTTGATCTAATCAACCTGTCAATTGAAAAACATGCCAATGCCAATAGatgtgcattaaaaaacatttataatatacttgtataattttataaatgtaggtttaaactgtatattaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU195080 lncRNA upstream 113913 11486492 ~ 11488514 (+) True G154879
TU195063 lncRNA upstream 136802 11449480 ~ 11465625 (+) True G154863
TU195045 lncRNA upstream 186098 11416065 ~ 11416329 (+) True G154847
TU195034 lncRNA upstream 192995 11406360 ~ 11409432 (+) False AMCG00005907
TU195024 lncRNA upstream 223138 11378780 ~ 11379289 (+) True G154831
TU195120 lncRNA downstream 8395 11613670 ~ 11614369 (+) True G154908
TU195133 lncRNA downstream 26816 11632091 ~ 11638019 (+) True G154915
TU195134 lncRNA downstream 33049 11638324 ~ 11638774 (+) True G154916
TU195135 lncRNA downstream 34411 11639686 ~ 11639926 (+) True G154917
TU195210 lncRNA downstream 301366 11906641 ~ 11912100 (+) True G154979
AMCG00005866 mRNA upstream 39800 11558449 ~ 11562627 (+) True AMCG00005866
AMCG00005865 mRNA upstream 94990 11495141 ~ 11507437 (+) True AMCG00005865
AMCG00005908 mRNA upstream 116044 11477695 ~ 11486383 (+) True AMCG00005908
AMCG00005906 mRNA upstream 141684 11457498 ~ 11460743 (+) True AMCG00005906
AMCG00005907 mRNA upstream 192755 11406306 ~ 11409672 (+) True AMCG00005907
AMCG00005885 mRNA downstream 77534 11682809 ~ 11686775 (+) True AMCG00005885
AMCG00005864 mRNA downstream 85546 11690821 ~ 11691592 (+) True AMCG00005864
AMCG00005883 mRNA downstream 197157 11802432 ~ 11824637 (+) True AMCG00005883
AMCG00005895 mRNA downstream 298077 11903352 ~ 11906087 (+) True AMCG00005895
AMCG00005896 mRNA downstream 326909 11932184 ~ 11935207 (+) True AMCG00005896
TU194985 other upstream 277353 11319964 ~ 11325074 (+) True G154798
TU194931 other upstream 516416 11083161 ~ 11086011 (+) True G154756
TU194894 other upstream 592073 11007544 ~ 11010354 (+) True AMCG00005840
TU194757 other upstream 686698 10913397 ~ 10915729 (+) True G154636
TU194711 other upstream 872218 10722332 ~ 10730209 (+) False AMCG00005834
TU195202 other downstream 298111 11903386 ~ 11905844 (+) False AMCG00005895
TU195527 other downstream 1086541 12691816 ~ 12696319 (+) False AMCG00005987
TU195528 other downstream 1087485 12692760 ~ 12696319 (+) False AMCG00005987
TU195530 other downstream 1092073 12697348 ~ 12698530 (+) False AMCG00005987
TU195532 other downstream 1101216 12706491 ~ 12707437 (+) False AMCG00005987

Expression Profile