RNA id: AMCG00005887


Basic Information

Item Value
RNA id AMCG00005887
length 1638
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00005887
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11622428 ~ 11627932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAAACGATCAGAATAAACAGTCCCAACGTGAAATACACCGAGAAGTTCATCGAGTCCCGGTATGCCTACCACAGCACAGCCGTCTCCCAGGAGAATGGCGTCTACAAGGTCACtccacacaccacacacttcACGTTCTGTACGGAGCGCAAGGTGCCCAAGCTGGGCGTGATGCTGGTGGGCTGGGGGGGCAACAACGGCACCACTGTGACGGCAGCAGTGCTGGCCAACAAGCTGGGGCTGAACTGGCAAACCAAGACTGGGCTGAAGaAAGCCAACTACTACGGCTCGCTGCTGCAGGCCTCCACGGTGAGTCTAGGCACTGGGCCTGGCGGGGAGGTCTTCGTCCCCTTCCGGAACCTGCTGCCCATGGTGCACCCTAATGACATCATCTTCGATGGCTGGGACATCTCCTCTCTGGACCTGGCCAGTGCAATGGAGCGGGCCCAGGTGCTGGACTGGCCCCTGCAGGAGCAGCTGCGCCCCCACATGGCACAGTTCAAGCCCCGACCCTCCATCTACATCCCAGAGTTCATCGCAGCCAATCAGGAGGCGAGAGCCGACAACATCCTGAAGGGAACAATAGCTGAGCAGGTGGAGCAGCTCCGCTCTGACATCCGGGACTTCAAACAGAAGAGTGGTGTGGACAAGGTGGTCGTGCTGTGGACCGCCAACACAGAGTGCTTCTGTGACATCATCCCTGGCGTGAATGACACCGCGCAGAACCTGCTGAAGACCATCCagGTGGGAAGACATGTCTCTCCCTCCACCCTGTTTGCGGTGGCCAGTATCCTGGAGGGATGTGCCTACATCAACGGCTCCCCGCAGAACACCTTCGTCCCTGGGGCGGTGGAGCTGGCCCAGCAGCGCCGGGTCTTCATCAGTGGAGATGACTTCAAGTCCGGGCAGACCAAGATCAAGTCCGTGCTGGTCGACTTCCTGGTTAGCGCCGGGATCAAGCCCACCGCCATCGTGAGCTACAACCACCTGGGCAACAACGACGGCATGAACCTGTCCTCCCCGCAGCAGTTCCGCTCTAAGGAGATCTCCAAGAGCAACGTGGTGGACGACATGGTGCGGTCCAACCCGGTGCTGTACAGAGAGGGCGAGAAACCGGACCACTGTGTGGTGATCAAGTACGTGCCCTACGTGGGCGACAGCAAGCGTGCCATGGACGAGTACACCTCCGAGATCATGATGGGTGGCACCAACACAATCGCCCTGCACAACACCTGTGAGGACTCTCTGCTGGCCAGCCCCATCATCCTGGACCTGGTGATCTTGACCGAGCTCTGCCAGCGCATCACCTTTCGCACGGACAGCGACCCAGACTTCCAGAGCTTCCACTGCGTGCTGTCGCTGCTCAGCTACCTGTGCAAGGCCCCCCTCGTCCCCCAGGGGGCGCCAGTGGTCAACGCCTTCTTCCGGCAGCGTGCCTGCATCGAAAACACCCTGAGggCCTGCCTCGGCCTGCCCCCTCAGAACCACATGCAGCTGGAGTACAAGATGCAGAGGagctgcctgcctgccagcATCCCTGTCGCAACCGCCAAGGCCACAGCTGCCCTTAGCAATGGCTACTACACTCCCCTGATCATCAACGGCACATCCAACGGCCTCCACGAACACTAG

Function

GO: NA

KEGG:

id description
K01858 INO1, ISYNA1; myo-inositol-1-phosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195122 lncRNA downstream 8045 11613674 ~ 11614383 (-) True G154909
TU195118 lncRNA downstream 8817 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA downstream 8817 11609836 ~ 11613611 (-) True G154906
TU195046 lncRNA downstream 206040 11415817 ~ 11416388 (-) True G154848
TU195025 lncRNA downstream 246223 11374506 ~ 11376205 (-) False AMCG00005875
TU195177 lncRNA upstream 61808 11689740 ~ 11690048 (-) True G154954
TU195245 lncRNA upstream 304180 11932112 ~ 11932947 (-) True G155003
TU195312 lncRNA upstream 375208 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA upstream 379536 12007468 ~ 12017366 (-) True G155059
TU195331 lncRNA upstream 497229 12125161 ~ 12126128 (-) True G155073
AMCG00005890 mRNA downstream 5615 11615392 ~ 11616813 (-) True AMCG00005890
AMCG00005912 mRNA downstream 152668 11463610 ~ 11469760 (-) True AMCG00005912
AMCG00005911 mRNA downstream 165203 11453748 ~ 11457225 (-) True AMCG00005911
AMCG00005909 mRNA downstream 170934 11450086 ~ 11451494 (-) True AMCG00005909
AMCG00005913 mRNA downstream 173845 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005888 mRNA upstream 9206 11637138 ~ 11649322 (-) True AMCG00005888
AMCG00005891 mRNA upstream 42421 11670353 ~ 11674352 (-) True AMCG00005891
AMCG00005889 mRNA upstream 47203 11675135 ~ 11680822 (-) True AMCG00005889
AMCG00005884 mRNA upstream 210069 11838001 ~ 11863038 (-) True AMCG00005884
AMCG00005900 mRNA upstream 269086 11897018 ~ 11902390 (-) True AMCG00005900
TU195020 other downstream 267795 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 283314 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 297361 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 709683 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 711996 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1043720 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1215846 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2540158 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2708959 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2881301 14509233 ~ 14509614 (-) True G155770

Expression Profile