RNA id: AMCG00005890


Basic Information

Item Value
RNA id AMCG00005890
length 1422
RNA type mRNA
GC content 0.69
exon number 1
gene id AMCG00005890
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11615392 ~ 11616813 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGAGCCCCGGGAGTACCTGTCAGATGGGAGCCCGCTGATCCAGGCGGCCCAGCTGGGGAGGCTGCGGCTGGTGCGTCTGCTGGTGGAGGGTGGTGCCCAGGTGAACGAGCGCAACCAGCGGGGGGAGACGGCCCTGGCGGCGGCCTGCAGAGGGACACGGCCCCTGCCCGAGCGGCTGAAGCTGCTGAGGTTCCTGCTGGAGCATGCGGCCGACCCCAACGCCCAGGACAAGGCGGGCCGCACGGCACTGATGTACGCCTGCATGGAGAAGGCCGGGCCGGAGGTGTCTGCCCTGCTGCTGGAGCACGGGGCCGACCCCGGCCTGGAGGACTACGGGGGGGCGTCGGCGCTGGTGTACGCGGTCAATGCCAGGGAGCCAACCACTCTGCAGGTGCTGCTGGACGGCTGCAGGCAACGCGGCCGCGACATCCTCATCATCGCCAGCCGCCTGGGCTCCTCGGGCCACCCCGTCACCAAGCGCTACCTGAACGCACCGCCCTCGCCGGACTATGAGGGGGGATGTGAGGGCGGCCGCTGCTCCTCCCCCGTGTCCTGCATGTCCCCCTCCGAGATCGAGCTCAAGACCAGCTCCCCCGGTTCGCCCGGCTCTGAGGGGGACAACATCTTCAGCTTCCGGGGCGCCAGCAAGAGGGGCTCGGTGGAGAATGAGCTGCTGCCCCCGGACTGGAACCCGCCCCATGGCCGCCGCCTGCGCTCTGAGCCCTGGCTGGCCATCCGCAACCTGTCCCACCTCCGCAGCGCCTATGAGGAGAGCCTAAGACGGGGGAGCaggcaggaggaggaagagggagacccaggagaaggaggagatTTGTCCGCCGATCTTGAAGGCCTGGCAGTGTCCAGGAGGGCCTCGGTTTGTCAACTCCTTGACTCCACTGCCGCAGAACGAGCCCAGCCTCTGGGAGCAGGCGGTAGGCAGGTGTCCAGGAAACCCTCCTTCGAGAAGCTGCCGCCATCCACCAAGACCCTGCTGCCGGACCGCAGGAACACGCTGCCAACCGTCCAGCCCAGTGGCGACCCCCTGCGCCTGCCTTCCCTGGTGCTGGACCCCTGTCCCCCCGATTCCCACTGCCAGATCAGCCAGCTCAGCCCAGGCTGGAAGGGCCACGCCTCCTCCTCACCCAACTGGAGGTCCTCCTCCCTGGAGTCATCCGACTGGCAGGCGATGGAGCCGTCGTCTGCCCGACCCTTCCTCCCTCCGCTCCCGGCCGGCCCGTCTCTGCTCTACTCCCCCGCCCCGCCCCAGATGCCGCTGCCCTGCCCCTCCCCCCGGCCCCTGCTCTGCAGCTCCAAGGCTGTTGGAGGCCGGCGGGGAGCGATGCAGCGCCGGCACTCAATCCAGGCGGAGCAGCTGAAGCACATGGGCGGCTACGATGAGATCCTGATCCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195122 lncRNA downstream 1009 11613674 ~ 11614383 (-) True G154909
TU195118 lncRNA downstream 1781 11569273 ~ 11613611 (-) False G154906
TU195117 lncRNA downstream 1781 11609836 ~ 11613611 (-) True G154906
TU195046 lncRNA downstream 199004 11415817 ~ 11416388 (-) True G154848
TU195025 lncRNA downstream 239187 11374506 ~ 11376205 (-) False AMCG00005875
TU195177 lncRNA upstream 72927 11689740 ~ 11690048 (-) True G154954
TU195245 lncRNA upstream 315299 11932112 ~ 11932947 (-) True G155003
TU195312 lncRNA upstream 386327 12003140 ~ 12023672 (-) True G155058
TU195313 lncRNA upstream 390655 12007468 ~ 12017366 (-) True G155059
TU195331 lncRNA upstream 508348 12125161 ~ 12126128 (-) True G155073
AMCG00005912 mRNA downstream 145632 11463610 ~ 11469760 (-) True AMCG00005912
AMCG00005911 mRNA downstream 158167 11453748 ~ 11457225 (-) True AMCG00005911
AMCG00005909 mRNA downstream 163898 11450086 ~ 11451494 (-) True AMCG00005909
AMCG00005913 mRNA downstream 166809 11417894 ~ 11448583 (-) True AMCG00005913
AMCG00005914 mRNA downstream 203203 11409667 ~ 11412189 (-) True AMCG00005914
AMCG00005887 mRNA upstream 5615 11622428 ~ 11627932 (-) True AMCG00005887
AMCG00005888 mRNA upstream 20325 11637138 ~ 11649322 (-) True AMCG00005888
AMCG00005891 mRNA upstream 53540 11670353 ~ 11674352 (-) True AMCG00005891
AMCG00005889 mRNA upstream 58322 11675135 ~ 11680822 (-) True AMCG00005889
AMCG00005884 mRNA upstream 221188 11838001 ~ 11863038 (-) True AMCG00005884
TU195020 other downstream 260759 11349245 ~ 11354633 (-) False AMCG00005879
TU195016 other downstream 276278 11336774 ~ 11339114 (-) False AMCG00005877
TU195013 other downstream 290325 11320737 ~ 11325067 (-) False AMCG00005876
TU194815 other downstream 702647 10910516 ~ 10912745 (-) True G154677
TU194821 other downstream 704960 10906295 ~ 10910432 (-) False G154677
TU195574 other upstream 1054839 12671652 ~ 12672458 (-) False AMCG00005989
TU195614 other upstream 1226965 12843778 ~ 12854803 (-) False AMCG00006063
TU196074 other upstream 2551277 14168090 ~ 14171607 (-) False AMCG00005997
TU196147 other upstream 2720078 14336891 ~ 14340663 (-) True AMCG00006013
TU196220 other upstream 2892420 14509233 ~ 14509614 (-) True G155770

Expression Profile